View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12468_low_3 (Length: 391)

Name: NF12468_low_3
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12468_low_3
NF12468_low_3
[»] chr4 (15 HSPs)
chr4 (1-371)||(21802767-21803133)
chr4 (1-379)||(34737695-34738070)
chr4 (4-379)||(53830398-53830777)
chr4 (6-371)||(21632673-21633036)
chr4 (130-379)||(2504894-2505143)
chr4 (133-379)||(46092306-46092552)
chr4 (133-379)||(46134831-46135077)
chr4 (65-380)||(5430644-5430959)
chr4 (78-380)||(2500539-2500838)
chr4 (98-293)||(20036251-20036446)
chr4 (1-70)||(51868291-51868360)
chr4 (9-70)||(27256579-27256640)
chr4 (8-100)||(26382345-26382438)
chr4 (158-216)||(43943462-43943520)
chr4 (4-52)||(2505250-2505298)
[»] chr8 (12 HSPs)
chr8 (4-382)||(10186228-10186602)
chr8 (1-379)||(4138188-4138563)
chr8 (11-311)||(8150455-8150752)
chr8 (1-380)||(20171827-20172202)
chr8 (4-205)||(11428184-11428387)
chr8 (232-380)||(11428038-11428182)
chr8 (209-278)||(918949-919018)
chr8 (1-70)||(14597489-14597558)
chr8 (319-379)||(918879-918939)
chr8 (5-72)||(32663981-32664048)
chr8 (7-72)||(28841606-28841671)
chr8 (1-82)||(31686154-31686235)
[»] chr7 (13 HSPs)
chr7 (4-379)||(47233715-47234089)
chr7 (130-379)||(5767957-5768206)
chr7 (130-379)||(25419468-25419717)
chr7 (1-380)||(44393537-44393912)
chr7 (130-311)||(39066831-39067012)
chr7 (4-70)||(39063933-39063999)
chr7 (7-72)||(17026574-17026639)
chr7 (4-72)||(39073300-39073368)
chr7 (3-70)||(39067114-39067181)
chr7 (158-216)||(47932975-47933033)
chr7 (4-52)||(25419824-25419872)
chr7 (4-72)||(47936407-47936475)
chr7 (4-46)||(5768333-5768375)
[»] chr3 (15 HSPs)
chr3 (4-379)||(35870217-35870592)
chr3 (14-371)||(48266151-48266505)
chr3 (130-379)||(52349726-52349975)
chr3 (4-265)||(26215157-26215420)
chr3 (248-380)||(26215432-26215560)
chr3 (4-70)||(33519206-33519272)
chr3 (6-67)||(10176709-10176769)
chr3 (158-216)||(5884423-5884481)
chr3 (158-216)||(54945777-54945835)
chr3 (4-72)||(3744451-3744519)
chr3 (4-52)||(52349559-52349607)
chr3 (4-72)||(54949208-54949276)
chr3 (1-52)||(346606-346657)
chr3 (1-72)||(10179363-10179434)
chr3 (14-72)||(43267912-43267970)
[»] chr5 (8 HSPs)
chr5 (4-379)||(21604962-21605334)
chr5 (4-334)||(37301929-37302256)
chr5 (130-379)||(36991043-36991292)
chr5 (326-379)||(37301800-37301853)
chr5 (4-67)||(10180440-10180503)
chr5 (8-100)||(11386776-11386869)
chr5 (4-46)||(11381259-11381301)
chr5 (4-46)||(36990874-36990916)
[»] chr2 (13 HSPs)
chr2 (9-379)||(41646600-41646969)
chr2 (130-379)||(7573984-7574233)
chr2 (130-379)||(16668579-16668828)
chr2 (209-275)||(43564238-43564304)
chr2 (209-278)||(29455448-29455517)
chr2 (319-378)||(43564317-43564376)
chr2 (4-72)||(37904075-37904143)
chr2 (4-72)||(22990009-22990077)
chr2 (319-359)||(29455527-29455567)
chr2 (4-52)||(7574352-7574400)
chr2 (4-52)||(16668935-16668983)
chr2 (4-70)||(29455079-29455145)
chr2 (4-72)||(37777735-37777802)
[»] chr1 (11 HSPs)
chr1 (60-371)||(22912432-22912740)
chr1 (130-379)||(13786229-13786478)
chr1 (130-379)||(25807664-25807914)
chr1 (65-311)||(23725991-23726231)
chr1 (326-382)||(39623648-39623704)
chr1 (332-380)||(23725938-23725986)
chr1 (5-103)||(23727848-23727948)
chr1 (4-72)||(39621647-39621715)
chr1 (4-52)||(13786062-13786110)
chr1 (4-52)||(25808033-25808081)
chr1 (1-55)||(29679047-29679101)
[»] chr6 (11 HSPs)
chr6 (130-379)||(13433346-13433595)
chr6 (226-372)||(16712015-16712155)
chr6 (2-70)||(18877363-18877431)
chr6 (326-382)||(18882819-18882875)
chr6 (158-216)||(16857232-16857290)
chr6 (11-72)||(18880846-18880907)
chr6 (158-216)||(26615320-26615380)
chr6 (326-371)||(26721029-26721074)
chr6 (158-216)||(26721248-26721308)
chr6 (4-52)||(13433714-13433762)
chr6 (4-56)||(8643578-8643630)
[»] scaffold0516 (2 HSPs)
scaffold0516 (11-311)||(3127-3425)
scaffold0516 (332-379)||(3430-3477)
[»] scaffold0316 (1 HSPs)
scaffold0316 (4-67)||(5480-5543)
[»] scaffold0182 (1 HSPs)
scaffold0182 (158-216)||(10171-10229)
[»] scaffold0045 (1 HSPs)
scaffold0045 (4-46)||(1376-1418)


Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 21802767 - 21803133
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  21802767 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggctctct 21802866  T
Q  101 tttgttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacaca 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21802867 tttgttcttgattctttactagccattcattactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacaca 21802966  T
Q  201 atgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactat 300  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||   |||||||    
T  21802967 atgaatgcattataatccattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaataatcttacacacacaagt---ttactat 21803063  T
Q  301 aaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccattt 371  Q
    |||||||||||       |||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  21803064 aaagctcctcatttttttctaagcttat-tatgtgttgcttatgttatccttttcatctcttcttccattt 21803133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 34738070 - 34737695
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctct 100  Q
    ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  34738070 ctctatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttatgccatgtggatctct 34737971  T
Q  101 tttgttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacaca 200  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  34737970 tttgttcttgattctttactagccattccgtacaatctatctttcattttccatcagttgcaaaaacactccatctacttcacttcatgcaagttacaca 34737871  T
Q  201 atgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactat 300  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||   |||||||    
T  34737870 atgaatgcattataatccattttattaacaatgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaagt---ttactat 34737774  T
Q  301 aaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34737773 aaagctcctcatttttttctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 34737695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 53830777 - 53830398
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    |||||| || |||||||||||||||||  |||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||| |||||| ||||||    
T  53830777 tatatatatatattctaagctacatttttcctatgtgtcaccttaccgatgcccccctttttaactaatctctcatacttatgccatgtggctatctttt 53830678  T
Q  104 gttcttgattctttactagccattccttactatctatct----ttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacac 199  Q
    ||||||||||||||||||||| |||||||||||||||||    ||||||| | ||| |||||||||||| |  |||||||||||||| ||||||||||||    
T  53830677 gttcttgattctttactagccgttccttactatctatctatctttcattttccatcggttgcaaaaacactctatttacttcacttcatgcaagttacac 53830578  T
Q  200 aatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattacta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53830577 aatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattacta 53830478  T
Q  300 taaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  53830477 taaagctcctcatttttttctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 53830398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 21633036 - 21632673
Alignment:
Q  6 tatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctcttttgt 105  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  21633036 tatacatgtattctaagctacattttgcctatgtgtcaccttaccaatacccccctttctaactaatctctcatacttatgccaagtggcgctcttttgt 21632937  T
Q  106 tcttgattctttactagccattccttactatctatctttcatttcctatcagttgca-aaaacatttcatttacttcacttcttgcaagttacacaatga 204  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  21632936 tcttgattctttactagccattccttactatctatctttcattttctatcagttgcaaaaaacatttcatttacttcacttcttgcaagttacacgatga 21632837  T
Q  205 atgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaag 304  Q
    ||||||||| |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||| ||||||||||||||||   |||||||||||    
T  21632836 atgcattatgatccattttattaatattgaggggttatgttttaaaattgttcatattcttaatcaatcttcttacacacacaagt---ttactataaag 21632740  T
Q  305 ctcctca-nnnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccattt 371  Q
    |||||||        |||||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  21632739 ctcctcattttttttctaagcttat-tatgtgttgcttatgttatccttttcatttcttcttccattt 21632673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 2505143 - 2504894
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2505143 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 2505044  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  2505043 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 2504944  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2504943 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 2504894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 133 - 379
Target Start/End: Original strand, 46092306 - 46092552
Alignment:
Q  133 ctatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaatatt 232  Q
    ||||||||||||||||| | ||| ||| ||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46092306 ctatctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 46092405  T
Q  233 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  46092406 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatat 46092505  T
Q  333 atgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  46092506 atgttgcttatgttatccttttcatttcttcttccatttcatttttt 46092552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 133 - 379
Target Start/End: Original strand, 46134831 - 46135077
Alignment:
Q  133 ctatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaatatt 232  Q
    ||||||||||||||||| | ||| ||| ||||||| |  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46134831 ctatctatctttcattttccatcggttacaaaaacttgccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaatatt 46134930  T
Q  233 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  46134931 gaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttatatat 46135030  T
Q  333 atgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||    
T  46135031 atgttgcttatgttatccttttcatttcttcttccatttcatttttt 46135077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 65 - 380
Target Start/End: Original strand, 5430644 - 5430959
Alignment:
Q  65 taactaatctctcatacttttgccaagtggctctcttttgttcttgattctttactagccattccttactatct-atctttcatttcctatcagttgcaa 163  Q
    |||||||| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||| ||    
T  5430644 taactaatttttcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttactatctaatctttcatttcccatcaattggaa 5430743  T
Q  164 aaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttat---taatattgaggggttacattttaaaattattcata 260  Q
    ||||  | ||||||||||||||| || ||||||||||||||||| |||||||||||||||||   ||||| |||||||||||||||||||||||||||||    
T  5430744 aaactctccatttacttcacttcatggaagttacacaatgaatgtattataatccattttattaataatagtgaggggttacattttaaaattattcata 5430843  T
Q  261 ttcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttc 360  Q
    |||||| |||||| ||||||||||||||||   |||||||||| |||||||       ||||||| |||||||||||||||||||||| ||| |||||||    
T  5430844 ttcttagtcaatcatcttacacacacaagt---ttactataaaactcctca-ttttttctaagctcatatatatgttgcttatgttattcttctcatttc 5430939  T
Q  361 ttcttccatttcactttttt 380  Q
    ||||||||||||| ||||||    
T  5430940 ttcttccatttcattttttt 5430959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 78 - 380
Target Start/End: Complemental strand, 2500838 - 2500539
Alignment:
Q  78 atacttttgccaagtggctctcttttgttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcattta 177  Q
    |||||| ||||| ||||||||||||||||||||||||  |||||  ||||||||||||| |||||||||||||| ||| |||||||||| |   ||||||    
T  2500838 atacttatgccatgtggctctcttttgttcttgattccctactaatcattccttactatttatctttcatttcccatccgttgcaaaaatacaccattta 2500739  T
Q  178 cttcacttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctct 277  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||  ||||||| |||||||||||    
T  2500738 cttcacttcatgcaagttgcacaatgaatgcattataatccattttattaatattgtgcggttacattttaaaattatttgtattcttgatcaatcctct 2500639  T
Q  278 tacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttt 377  Q
    ||||||||||||||||   ||||||| || ||||       ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||    
T  2500638 tacacacacaagttta---ctataaatctactcatttttttctaagcttacatatatgttgcttatattatccttttcatttcttcttccatttcatttt 2500542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 98 - 293
Target Start/End: Original strand, 20036251 - 20036446
Alignment:
Q  98 tcttttgttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaa-catttcatttacttcacttcttgcaagtta 196  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||| || ||||| || |||| |||||||||||| ||||||||     
T  20036251 tcttttgttctt-attctttactagtcattcattactatctatctttcatttcccatcagatgtaaaaaacacttcagttacttcacttcatgcaagttg 20036349  T
Q  197 cacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 293  Q
    || ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  20036350 cataatgaatgcattataattcattttattaatattgagcagttacattttaaaattaatcatattcttaatcaatcctcttacactcacaagttta 20036446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 51868291 - 51868360
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||||||||||||||||||  ||||||| || |||||||||||||||||||||| |||||||||||||    
T  51868291 ctctatatacatgtattctaacatacattttgcttatgtgtcaccttaccaatgcccccctttctaacta 51868360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 27256579 - 27256640
Alignment:
Q  9 acatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||| |||||||||||||    
T  27256579 acatgtattctaacctacatttttcctatgtgtcaccttaccaatgcccccctttctaacta 27256640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 26382345 - 26382438
Alignment:
Q  8 tacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgc-ctccctttctaactaatctctcatacttttgccaagtggctctct 100  Q
    |||||||||||||||||||||||  | ||  |||||||| ||||| || |||||||| |||| |||||||||||||| ||||| ||||||||||    
T  26382345 tacatgtattctaagctacattttccttacatgtcacctcaccaaagctctccctttgtaaccaatctctcatacttatgccatgtggctctct 26382438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 43943462 - 43943520
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||  |||||||||||||||||||    
T  43943462 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 43943520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 2505298 - 2505250
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  2505298 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 2505250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 4 - 382
Target Start/End: Original strand, 10186228 - 10186602
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| ||||||||| |||||||||    
T  10186228 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatatctcttacttatgccaagtgactctctttt 10186327  T
Q  104 gttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 203  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10186328 gttcttgattctttactagtcattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacctcacttcttgcaagttacacaatg 10186427  T
Q  204 aatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||    
T  10186428 aatgcattataatccattttattaatattgaggggttacattttaaaattgttcatattcttaatcaatcctcttacacacacaagt---ttactataaa 10186524  T
Q  304 gctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttttga 382  Q
    ||||||||       | |||||||| ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  10186525 gctcctcatttttttccaagcttat-tatgtgttgcttatgttatccttttcatttcctcttccatttcatttttttga 10186602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 4138188 - 4138563
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  4138188 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccaagtggctctct 4138287  T
Q  101 tttgttcttgattctttactagccattccttactatct-------atctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaag 193  Q
    ||||||||||||||||||||||||||||  ||||||||       ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4138288 tttgttcttgattctttactagccattctctactatctatctttcatctttcatttcctatccgttgcaaaaacatttcatttacttcacttcttgcaag 4138387  T
Q  194 ttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagttta 293  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||  |||||||||||||||||||     
T  4138388 ttacacaatgaatgcattataatctattttattaatattgaggggttacgttttaaaattgttcatattcttaatcaagactcttacacacacaagttt- 4138486  T
Q  294 ttactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
            | ||||||||       |||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  4138487 --------acgctcctcatttttttctaagcttat-tatgtgttgcttatgttatccttttcatttcttcttccatttcatttttt 4138563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 311
Target Start/End: Complemental strand, 8150752 - 8150455
Alignment:
Q  11 atgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctcttttgttcttg 110  Q
    |||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||| ||| ||||||||||||    
T  8150752 atgtattctaagctacattttgcatatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtgactcacttttgttcttg 8150653  T
Q  111 attctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcat 210  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||  ||| |||||||||||||||||||    
T  8150652 attctttactagccatttcttactatctatctttcatttcccatcagttgcaaaaacactccatttacttcactttatgcgagttacacaatgaatgcat 8150553  T
Q  211 tataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctc 310  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||||||||    
T  8150552 tataatcaattttattaatattgaggggttacattttaaaattattcatattcttaatcagtcctcttacacacacaagt---ttactataaagctcctc 8150456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 20171827 - 20172202
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttttgccaagtggctctc 99  Q
    ||||||||| ||||||| ||| |||||||| || |||||||||| | || |||   | | |||  |||||||| | | |||||| || || |||||||||    
T  20171827 ctctatatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctc 20171926  T
Q  100 ttttgttcttgattctttactagccattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttaca 198  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||| ||| ||||||  |  |||||||||||||| || ||||||||    
T  20171927 ttttgttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttaca 20172026  T
Q  199 caatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattact 298  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||    
T  20172027 caatgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttact 20172123  T
Q  299 ataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcactttttt 380  Q
    |||||||||||||       ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  20172124 ataaagctcctca---ttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttcattttttt 20172202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 4 - 205
Target Start/End: Complemental strand, 11428387 - 11428184
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttttgccaagtggctctcttt 102  Q
    ||||||||||||||||||||||||||| || |||||||||||| || |||   |||||||  |||||||| | |||||||| ||||  ||||||||||||    
T  11428387 tatatacatgtattctaagctacattttgcttatgtgtcacctcactaatatttcccttttgtaactaatttttcatacttatgccttgtggctctcttt 11428288  T
Q  103 tgttcttgattctttactagccattccttactatct-atctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaa 201  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||| ||||||  | ||||||||||||||| || |||||||||||    
T  11428287 tgttcttgattctttactagccattccttactatctaatctttcattttccatcaattggaaaaactatccatttacttcacttcatggaagttacacaa 11428188  T
Q  202 tgaa 205  Q
    ||||    
T  11428187 tgaa 11428184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 232 - 380
Target Start/End: Complemental strand, 11428182 - 11428038
Alignment:
Q  232 tgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatata 331  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||   | |||||||||||||       ||||||| |||||    
T  11428182 tgaggggttacattttaaaattattcatattcttagtcaatcatcttacacacagaagttta---cgataaagctcctcatttttt-ctaagctcatata 11428087  T
Q  332 tatgttgcttatgttatccttttcatttcttcttccatttcactttttt 380  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  11428086 tatgttgcttatgttatccttctcatttcttcttccatttcattttttt 11428038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 278
Target Start/End: Complemental strand, 919018 - 918949
Alignment:
Q  209 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  919018 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 918949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 14597558 - 14597489
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||||||||    
T  14597558 ctctatatacatgtattctaagctacattttgcctatatgtcaccttaccaattcccccctttctaacta 14597489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 319 - 379
Target Start/End: Complemental strand, 918939 - 918879
Alignment:
Q  319 ctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  918939 ctaagcttatatatatattgcatatgttatccttttcatttcttcttccatttcatttttt 918879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 32663981 - 32664048
Alignment:
Q  5 atatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||| ||||| || || |||||||||||| ||||||   ||||||||||||||||    
T  32663981 atatacatgtattctaaactacactttgcttatgtgtcacctcaccaatttttccctttctaactaat 32664048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 28841606 - 28841671
Alignment:
Q  7 atacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||||| | || || |||||||||||| |||||| || |||| ||||||||||    
T  28841606 atacatgtattctaagctatactttgcttatgtgtcacctcaccaattcccccctctctaactaat 28841671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31686154 - 31686235
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatact 82  Q
    |||| |||||||||||||||| |||||| | || |||||||||||| || ||  || |||||||||| ||| || |||||||    
T  31686154 ctctgtatacatgtattctaaactacatattgcttatgtgtcacctcacaaaaacccccctttctaattaacctttcatact 31686235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 47234089 - 47233715
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    |||||| || |||||||| ||| ||||  |||||||||||| ||||||||||| |||||||||||||||||||||||||| || || |||||| ||||||    
T  47234089 tatatatatatattctaaactatatttttcctatgtgtcactttaccaatgcc-ccctttctaactaatctctcatacttatgtcatgtggctatctttt 47233991  T
Q  104 gttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 203  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  47233990 gttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcaaaaacacttcatttacttcacttcatgcaagttacacaatg 47233891  T
Q  204 aatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 303  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233890 aatgcattataatccattttattaatattaaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 47233791  T
Q  304 gctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||        |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  47233790 gctcctcatttttttataagcttatatatatgttgcttatattatccttttcatttcttcttccatttcatttttt 47233715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 5768206 - 5767957
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  5768206 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatcaattttattaat 5768107  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  5768106 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttata 5768007  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5768006 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 5767957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 25419717 - 25419468
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25419717 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 25419618  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  25419617 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 25419518  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25419517 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 25419468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 44393537 - 44393912
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttttgccaagtggctctc 99  Q
    ||||||||| ||||||| ||| |||||||| || |||||||||| | || |||   | | |||  |||||||| | | |||||| || || |||||||||    
T  44393537 ctctatatatatgtattttaaactacattttgcttatgtgtcacttcactaatattttctttttgtaactaattttttatacttatgtcatgtggctctc 44393636  T
Q  100 ttttgttcttgattctttactagccattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttaca 198  Q
    ||||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||| ||| ||||||  |  |||||||||||||| || ||||||||    
T  44393637 ttttgttcttgattctttactagtcatttcttactatctaatctttcatttcccatcaattggaaaaactctctatttacttcacttcatggaagttaca 44393736  T
Q  199 caatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattact 298  Q
    ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||   |||||    
T  44393737 caatgaatgtattataatccattttattaatagtgaggggtttcattttaaaattattcatattcttagtcaatcatcttacacacacaagt---ttact 44393833  T
Q  299 ataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcactttttt 380  Q
    |||||||||||||       ||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  44393834 ataaagctcctca---ttttctaagctcatatatatgttgcttatgttatccttctcatttcttcttccatttcattttttt 44393912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 130 - 311
Target Start/End: Complemental strand, 39067012 - 39066831
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39067012 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 39066913  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  39066912 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacatacaagtttattactataaggctcctca 39066831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39063999 - 39063933
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||||||||||||||| |||||||| || ||||||||| ||||||||||||||||||||||||||    
T  39063999 tatatacatgtattctaacctacattttgcttatgtgtcatcttaccaatgcctccctttctaacta 39063933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 17026574 - 17026639
Alignment:
Q  7 atacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||||||| || || |||||||||||| |||||| || |||| ||||||||||    
T  17026574 atacatgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaat 17026639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 39073368 - 39073300
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||| ||||| || || |||||||||||| |||||| || |||| ||||||||||    
T  39073368 tatatacatgtattctaacctacactttgcttatgtgtcacctcaccaattcccccctctctaactaat 39073300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 39067181 - 39067114
Alignment:
Q  3 ctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    ||||||||||||||||||| ||||||||  |||||||||||||| |||||   | |||||||||||||    
T  39067181 ctatatacatgtattctaacctacatttttcctatgtgtcacctcaccaacatccccctttctaacta 39067114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 47933033 - 47932975
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||  |||||||||||||||||||    
T  47933033 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 47932975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25419872 - 25419824
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  25419872 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 47936475 - 47936407
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||||||||| ||  | ||  |||||||  ||||||||| |||||||||||||||    
T  47936475 tatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaat 47936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 5768375 - 5768333
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcacct 46  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  5768375 tatatacatgtattctaacctacatttttcctatgtgtcacct 5768333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 379
Target Start/End: Original strand, 35870217 - 35870592
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    |||||| || |||||||||||||||||   ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| ||||||    
T  35870217 tatatatatatattctaagctacattttttctatgtgtcaccttaccaatgcccccctttctaactaatctctcatacttatgccatgtggctatctttt 35870316  T
Q  104 gttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 203  Q
     |||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||||  | ||||||||||||||| ||||||||||||||||    
T  35870317 cttcttgattctttactagtcattccttactatctatctttcattttccatcagttgcgaaaactctccatttacttcacttcatgcaagttacacaatg 35870416  T
Q  204 aatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 303  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35870417 aatgcattataatccattttattaatattgagaggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 35870516  T
Q  304 gctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    | ||||||       |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35870517 ggtcctcatttttttctaaacttatatatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 35870592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 14 - 371
Target Start/End: Original strand, 48266151 - 48266505
Alignment:
Q  14 tattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctcttttgttcttgatt 113  Q
    ||||||||||| |||||  | |||||||||||||| | ||||| ||||||||||||||||||  |||||| || || |||||| |||||| |||||||||    
T  48266151 tattctaagcttcatttttcttatgtgtcaccttatctatgcccccctttctaactaatctc--atacttatgtcatgtggctatcttttcttcttgatt 48266248  T
Q  114 ctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattat 213  Q
    ||||||||| |||||||||||||||||||||||||| | |||||||||||||||  | ||||||||| ||||| ||||||||||||||||||||||||||    
T  48266249 ctttactagtcattccttactatctatctttcattttccatcagttgcaaaaactctccatttactt-acttcatgcaagttacacaatgaatgcattat 48266347  T
Q  214 aatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcann 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  48266348 aatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatt 48266447  T
Q  314 nnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccattt 371  Q
         ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48266448 tttttctaagcttatatatatgttgcttatgttatcctcttcatttcttcttccattt 48266505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 130 - 379
Target Start/End: Original strand, 52349726 - 52349975
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52349726 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 52349825  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  52349826 attgaggggttacattttaaaattatttatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 52349925  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  52349926 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 52349975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 4 - 265
Target Start/End: Original strand, 26215157 - 26215420
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttttgccaagtggctctcttt 102  Q
    |||||||||||||||||| ||||||||  | ||||||| || | |||||||  |||||||  ||||||||||||||||||| ||||| ||||||||||||    
T  26215157 tatatacatgtattctaaactacattttacttatgtgttacttcaccaatgtttcccttttgtaactaatctctcatacttatgccatgtggctctcttt 26215256  T
Q  103 tgttcttgattctttactagccattccttactatcta-tctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaa 201  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| | |||| ||| ||||||  | ||||||||||||||| || |||||||||||    
T  26215257 tgttcttgattctttgctagccattccttactatctaatctttcattttccatcaattggaaaaactctccatttacttcacttcatggaagttacacaa 26215356  T
Q  202 tgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattctt 265  Q
    ||||||  |||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  26215357 tgaatgtgttataatccattttattaatagcgaggggttacattttaaaattattcatattctt 26215420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 248 - 380
Target Start/End: Original strand, 26215432 - 26215560
Alignment:
Q  248 aaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgtta 347  Q
    ||||||||||||||||||| |||||| |||||||||||||||||||   |||||||||||||||       ||||||| |||||||||||||||||||||    
T  26215432 aaaattattcatattcttagtcaatcatcttacacacacaagttta---ctataaagctcctcatttttt-ctaagctcatatatatgttgcttatgtta 26215527  T
Q  348 tccttttcatttcttcttccatttcactttttt 380  Q
    ||||| |||||||||||||||||||| ||||||    
T  26215528 tccttctcatttcttcttccatttcattttttt 26215560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 33519272 - 33519206
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||||||||||||||| |||||| | || ||||||||| ||||| ||||||||||||||||||||    
T  33519272 tatatacatgtattctaacctacatattgcttatgtgtcatcttactaatgcctccctttctaacta 33519206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 10176769 - 10176709
Alignment:
Q  6 tatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaa 67  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||| ||||||||||    
T  10176769 tatacatgtattctaaactacatttttcctatgtgtcaccttaccaatgcc-ccctttctaa 10176709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 5884481 - 5884423
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||  |||||||||||||||||||    
T  5884481 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 5884423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 54945835 - 54945777
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||  |||||||||||||||||||    
T  54945835 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 54945777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 3744519 - 3744451
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||| ||||| || || |||||||||||| |||||| |  |||| ||||||||||    
T  3744519 tatatacatgtattctaacctacactttgcttatgtgtcacctcaccaattctcccctctctaactaat 3744451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 52349559 - 52349607
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  52349559 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 52349607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 54949276 - 54949208
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||||||||| ||  | ||  |||||||  ||||||||| |||||||||||||||    
T  54949276 tatatacatgtattctaagctacactttacttacatgtcaccacaccaatgcccccctttctaactaat 54949208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 346606 - 346657
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    ||||||||||||||||||||| |||||||| || ||||||||| || |||||    
T  346606 ctctatatacatgtattctaaactacattttgcttatgtgtcatctcaccaa 346657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 10179434 - 10179363
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||||||| ||||| || || ||  |||||||  ||||||||| || ||||||||||||    
T  10179434 ctctatatacatgtattctaaactacactttgcttacatgtcaccacaccaatgcccccttttctaactaat 10179363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 43267970 - 43267912
Alignment:
Q  14 tattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||   |||||| |||||| ||||||||| |||| ||||||||||    
T  43267970 tattctaagctacattttttctatgtatcacctcaccaatgcccccctctctaactaat 43267912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 379
Target Start/End: Complemental strand, 21605334 - 21604962
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    |||||| || |||||||||||||||||  ||||||||||||||||||||| || |||||||||||||||||||||||||| || || |||||| ||||||    
T  21605334 tatatatatatattctaagctacatttttcctatgtgtcaccttaccaatacc-ccctttctaactaatctctcatacttatgtcatgtggctatctttt 21605236  T
Q  104 gttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 203  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||| | ||  | |||||||||| ||||||||||||||||| ||||||||||||||||    
T  21605235 gttcttgattctttattagtcattccttactatctatctttcattttccattggctgcaaaaacacttcatttacttcacttcatgcaagttacacaatg 21605136  T
Q  204 aatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 303  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21605135 aatgcattataatccattttattaatattgaggggttaaattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 21605036  T
Q  304 gctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||       |||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  21605035 gctcctcatttttttctaagct--tatatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 21604962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 334
Target Start/End: Complemental strand, 37302256 - 37301929
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaatctctcatacttttgccaagtggctctctttt 103  Q
    |||||||||||||||||| |||||||| || |||||||||||||||||||| || |||||||||||||||||| |||||| ||||| |||| ||||||||    
T  37302256 tatatacatgtattctaacctacattttgcatatgtgtcaccttaccaatgacttcctttctaactaatctcttatacttatgccatgtggatctctttt 37302157  T
Q  104 gttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatg 203  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||||||||||| | ||||||||||||||| ||||||||||||||||    
T  37302156 gttcttgattctttactagccattccgtacaatctatctttcatttcccatcatttgcaaaaacactccatttacttcacttcatgcaagttacacaatg 37302057  T
Q  204 aatgcattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaa 303  Q
    ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||||||||||||   ||||||||||    
T  37302056 aatgcattataatccattttattaataatggagggttacattttaaaattattcatattcttaatcaatccacttacacacacaagt---ttactataaa 37301960  T
Q  304 gctcctcannnnnnnctaagcttatatatat 334  Q
     |||||||       ||||||||||||||||    
T  37301959 actcctcatttttttctaagcttatatatat 37301929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Original strand, 36991043 - 36991292
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  36991043 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatctattttattaat 36991142  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  36991143 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcatttttttctaagcttata 36991242  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36991243 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 36991292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 326 - 379
Target Start/End: Complemental strand, 37301853 - 37301800
Alignment:
Q  326 tatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  37301853 tatatatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 37301800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 10180440 - 10180503
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaa 67  Q
    |||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||||||||    
T  10180440 tatatacatgtattctaacctacattttgcttatgtgtcacctcaccaatgcctccctttctaa 10180503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 100
Target Start/End: Original strand, 11386776 - 11386869
Alignment:
Q  8 tacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgc-ctccctttctaactaatctctcatacttttgccaagtggctctct 100  Q
    |||||||||||||||||||||||  | ||  |||||||| |||||  | |||||||| |||| |||||||||||||| ||||| ||||||||||    
T  11386776 tacatgtattctaagctacattttccttacatgtcacctcaccaaaactctccctttgtaaccaatctctcatacttatgccatgtggctctct 11386869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 11381259 - 11381301
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcacct 46  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  11381259 tatatacatgtattctaacctacattttgcctatgtgtaacct 11381301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 36990874 - 36990916
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcacct 46  Q
    |||||||||||||||||| ||||||||  ||||||||||||||    
T  36990874 tatatacatgtattctaacctacatttttcctatgtgtcacct 36990916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 9 - 379
Target Start/End: Complemental strand, 41646969 - 41646600
Alignment:
Q  9 acatgtattctaagctacatttcgcctatgtgtcaccttaccaatg-cctccctttctaactaatctctcatacttttgccaagtggctctcttttgttc 107  Q
    ||||||||| ||||||||||||  |||||||||||||||||||||| || |||||| ||||||||||||||||||| ||||| |||||| ||||||||||    
T  41646969 acatgtattataagctacatttttcctatgtgtcaccttaccaatgtcccccctttttaactaatctctcatacttatgccatgtggctatcttttgttc 41646870  T
Q  108 ttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatg 207  Q
    |||||||||||||||||||||||||||   |||||||||||| | ||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||||    
T  41646869 ttgattctttactagccattccttact---tatctttcattttccatcggttgcaaaaacactccatttacttcatttcatgcaagttacacaatgaatg 41646773  T
Q  208 cattataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctc 307  Q
     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41646772 tattttaatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctc 41646673  T
Q  308 ctca-nnnnnnnctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||        |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
T  41646672 ctcattttttttctaagcttatatatatgttgcttatgttgtccttttcatttcttcttccatttcatttttt 41646600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 7574233 - 7573984
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7574233 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 7574134  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  7574133 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 7574034  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7574033 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 7573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 16668828 - 16668579
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16668828 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacataatgaatgcattataatccattttattaat 16668729  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  16668728 attgaggggttacattttaaaattattcatattcttgatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 16668629  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  16668628 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 16668579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 209 - 275
Target Start/End: Original strand, 43564238 - 43564304
Alignment:
Q  209 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 275  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43564238 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcct 43564304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 209 - 278
Target Start/End: Original strand, 29455448 - 29455517
Alignment:
Q  209 attataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctctt 278  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||    
T  29455448 attataatccattttattaatatcgaggggttacattttaaaattattcatattcttaattaatcctctt 29455517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 319 - 378
Target Start/End: Original strand, 43564317 - 43564376
Alignment:
Q  319 ctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcactttt 378  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43564317 ctaagcttatatatatgttgcttatgttatccttttcatttcttcttccatttcattttt 43564376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 37904143 - 37904075
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||||||||||||  |||||||||||||| ||||||||| |||| ||||||||||    
T  37904143 tatatacatgtattctaagctacatttttcctatgtgtcacctcaccaatgcccccctctctaactaat 37904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 22990077 - 22990009
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||||  ||||||| || |||||||||||| |||||| || |||| ||||||||||    
T  22990077 tatatacatgtattctaacgtacattttgcttatgtgtcacctcaccaattcccccctctctaactaat 22990009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 29455527 - 29455567
Alignment:
Q  319 ctaagcttatatatatgttgcttatgttatccttttcattt 359  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  29455527 ctaagcttatatatatgttgcttatgttatcctttttattt 29455567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 7574400 - 7574352
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  7574400 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 7574352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 16668983 - 16668935
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  16668983 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 16668935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 29455079 - 29455145
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||| ||||||||||||||||||||  |||||||||||| | ||||||  | | |||||||||||    
T  29455079 tatatatatgtattctaagctacatttttcctatgtgtcacttcaccaatatccctctttctaacta 29455145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 37777735 - 37777802
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||| ||||| || || ||  |||||||| |||||| || |||||||||||||||    
T  37777735 tatatacatgtattctaacctacactttgcttacatgtcacctcaccaattcc-ccctttctaactaat 37777802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 60 - 371
Target Start/End: Complemental strand, 22912740 - 22912432
Alignment:
Q  60 ctttctaactaatctctcatacttttgccaagtggctctcttttgttcttgattctttactagccattccttactatctatctttcatttcctatca-gt 158  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||| ||    
T  22912740 ctttctaactaatctctcatacttatgccatgtggctctcttttgttcttgattctttactagccattccttattatttatctttcatttcccatcaggt 22912641  T
Q  159 tgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattca 258  Q
    |||| ||||| | |||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||    
T  22912640 tgcagaaacactccatttacttcacttcttgcatgttacaaaatgaatgcattataaaccattttattaata-tgaggagttacattttaaaattattca 22912542  T
Q  259 tattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttatatatatgttgcttatgttatccttttcatt 358  Q
    |||||||||||||||||||||||||||| | |   ||||||| ||||||||||       |||||||||||||||||||||||||||||| |||||||||    
T  22912541 tattcttaatcaatcctcttacacacacgaat---ttactattaagctcctcatttttttctaagcttatatatatgttgcttatgttattcttttcatt 22912445  T
Q  359 tcttcttccattt 371  Q
    |||||||||||||    
T  22912444 tcttcttccattt 22912432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Original strand, 13786229 - 13786478
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13786229 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 13786328  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  13786329 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 13786428  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13786429 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 13786478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 25807914 - 25807664
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | |||| || ||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25807914 ttactatctatctttcattttccatcaattacaaaaactttccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 25807815  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctca-nnnnnnnctaagcttat 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  25807814 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcattttttttctaagcttat 25807715  T
Q  329 atatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  25807714 atatatgtttcttatgttatccttttcatttcttcttccatttcatttttt 25807664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 65 - 311
Target Start/End: Complemental strand, 23726231 - 23725991
Alignment:
Q  65 taactaatctctcatacttttgccaagtggctctcttttgttcttgattctttactagccattccttactatctatctttcatttcctatcagttgcaaa 164  Q
    ||||||||||||||||||| ||  |  ||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||   ||| ||||||||    
T  23726231 taactaatctctcatacttatgttatatggctctcttttgttcttgattctttactggtcattctttactatctatctttcatttttcatctgttgcaaa 23726132  T
Q  165 aacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaatattgaggggttacattttaaaattattcatattct 264  Q
    |||| ||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||| |  ||||||||||| ||||||||||||||||    
T  23726131 aacacttcatttacttcatttcatgcaagttgcacaatgaatgaattataatccattttattaatattaaacggttacatttt-aaattattcatattct 23726033  T
Q  265 taatcaatcctcttacacacacaagtttattactataaagctcctca 311  Q
    ||||||||||||||   |||||||||   ||||||||||||||||||    
T  23726032 taatcaatcctctt--gcacacaagt---ttactataaagctcctca 23725991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 39623648 - 39623704
Alignment:
Q  326 tatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttttga 382  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  39623648 tatatatatattgcttattttatccttttcatttcttcttccatttcatttttttga 39623704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 23725986 - 23725938
Alignment:
Q  332 tatgttgcttatgttatccttttcatttcttcttccatttcactttttt 380  Q
    |||||| ||||||| ||||||||||||||||||||||||||| ||||||    
T  23725986 tatgtttcttatgtcatccttttcatttcttcttccatttcattttttt 23725938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 23727948 - 23727848
Alignment:
Q  5 atatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgc-ctc-cctttctaactaatctctcatacttttgccaagtggctctcttt 102  Q
    |||||||||||||||||| | ||||| |   || |||||||| ||||| || ||| ||||| |||| |||||||||||||| ||||||||||||||||||    
T  23727948 atatacatgtattctaaggttcattttgatgatttgtcacctcaccaaagctctctcctttttaaccaatctctcatacttatgccaagtggctctcttt 23727849  T
Q  103 t 103  Q
    |    
T  23727848 t 23727848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 39621647 - 39621715
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    |||||||||||||||||| ||||| || || |||||||||||| |||||| || |||| ||||||||||    
T  39621647 tatatacatgtattctaaactacactttgcttatgtgtcacctcaccaattcccccctctctaactaat 39621715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 13786062 - 13786110
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  13786062 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13786110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 25808081 - 25808033
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  25808081 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 25808033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29679047 - 29679101
Alignment:
Q  1 ctctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgc 55  Q
    ||||||||||||||||||||| ||||| || || |||||||||||| ||| ||||    
T  29679047 ctctatatacatgtattctaaactacactttgcttatgtgtcacctcacctatgc 29679101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 130 - 379
Target Start/End: Complemental strand, 13433595 - 13433346
Alignment:
Q  130 ttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataatccattttattaat 229  Q
    |||||||||||||||||||| | ||||||| |||||||  | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13433595 ttactatctatctttcattttccatcagttacaaaaactctccatttacttcacttcatgcaagttacacaatgaatgcattataatccattttattaat 13433496  T
Q  230 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagcttata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||    
T  13433495 attgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaaatttattactataaagctcctcatttttttctaagcttata 13433396  T
Q  330 tatatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13433395 tatatgttgcttatgttatccttttcatttcttcttccatttcatttttt 13433346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 226 - 372
Target Start/End: Complemental strand, 16712155 - 16712015
Alignment:
Q  226 taatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcctcannnnnnnctaagct 325  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||   | || ||||| |||||||       |||||||    
T  16712155 taatagtgaggggttacattttaaaattattcatattcttaatcaatcatcttacacacac--gt---tcaccataaaactcctcatttttttctaagct 16712061  T
Q  326 tatatatatgttgcttatgttatccttttcatttcttcttccatttc 372  Q
     |||||||||||||||||||||||||||||| |||||||||||||||    
T  16712060 catatatatgttgcttatgttatccttttca-ttcttcttccatttc 16712015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 18877363 - 18877431
Alignment:
Q  2 tctatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaacta 70  Q
    |||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||    
T  18877363 tctatatacatgtattctaacctacattttgcttaggtgtcaccttaccaatgcctccctttctaacta 18877431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 326 - 382
Target Start/End: Original strand, 18882819 - 18882875
Alignment:
Q  326 tatatatatgttgcttatgttatccttttcatttcttcttccatttcacttttttga 382  Q
    ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||    
T  18882819 tatatatatattgcttattttatccttttcatttcttcttccatttcatttttttga 18882875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 16857232 - 16857290
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||  |||||||||||||||||||    
T  16857232 ttgcaaaagcactgcatttacttcacttcatgcaagttgtacaatgaatgcattataat 16857290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 18880846 - 18880907
Alignment:
Q  11 atgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaactaat 72  Q
    ||||||||||||||||| || || |||||||||||| |||||| || |||| ||||||||||    
T  18880846 atgtattctaagctacactttgcttatgtgtcacctcaccaattcccccctctctaactaat 18880907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 26615380 - 26615320
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaa--gttacacaatgaatgcattataat 216  Q
    ||||||||||| ||||||||||||||||| |||||  |||  |||||||||||||||||||    
T  26615380 ttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26615320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 26721074 - 26721029
Alignment:
Q  326 tatatatatgttgcttatgttatccttttcatttcttcttccattt 371  Q
    ||||||| ||||||||||||||||||||| |||||||||| |||||    
T  26721074 tatatatttgttgcttatgttatccttttaatttcttctttcattt 26721029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 26721308 - 26721248
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaa--gttacacaatgaatgcattataat 216  Q
    ||||||||||| ||||||||||||||||| |||||  |||  |||||||||||||||||||    
T  26721308 ttgcaaaaacacttcatttacttcacttcatgcaattgttgtacaatgaatgcattataat 26721248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 13433762 - 13433714
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaa 52  Q
    |||||||||||||||||| ||||||||  |||||||||||||| |||||    
T  13433762 tatatacatgtattctaacctacatttttcctatgtgtcacctcaccaa 13433714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 8643630 - 8643578
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcc 56  Q
    ||||||||||||||||||||||||||| || ||  |||||||| || ||||||    
T  8643630 tatatacatgtattctaagctacattttgcttacatgtcacctcacaaatgcc 8643578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 3127 - 3425
Alignment:
Q  11 atgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttc-taactaatctctcatacttttgccaagtggctctcttttgttctt 109  Q
    ||||||| ||| ||||||||  | |||||||||| | ||||| | ||||||||  ||||||||||||||||||| || || |||||||||||||||||||    
T  3127 atgtattttaaactacattttacttatgtgtcacttcaccaacgtctcccttttgtaactaatctctcatacttatgtcatgtggctctcttttgttctt 3226  T
Q  110 gattctttactagccattccttactatctatctttcatttcctatcagttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgca 209  Q
    ||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||| |||||||| || |    
T  3227 gattctttactagccattctttactatttatctttcatttcccatcagttgcaaaaacacttcatttacttcacttcatgcaagttgcacaatgattgaa 3326  T
Q  210 ttataatccattttattaatattgaggggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagtttattactataaagctcct 309  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  3327 ttataatccattttattaatattaagcggttacattttaaaattattcatattcttaatcaatcctcttacacacacaagt---ttactataaagctcct 3423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 332 - 379
Target Start/End: Original strand, 3430 - 3477
Alignment:
Q  332 tatgttgcttatgttatccttttcatttcttcttccatttcacttttt 379  Q
    |||||||||||||| |||||||| |||||||||||||||||| |||||    
T  3430 tatgttgcttatgtcatccttttaatttcttcttccatttcatttttt 3477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 5543 - 5480
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcaccttaccaatgcctccctttctaa 67  Q
    |||||||||||||||||| ||||||||  ||||||||||||||||||||||   ||||||||||    
T  5543 tatatacatgtattctaacctacatttttcctatgtgtcaccttaccaatgttcccctttctaa 5480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 10229 - 10171
Alignment:
Q  158 ttgcaaaaacatttcatttacttcacttcttgcaagttacacaatgaatgcattataat 216  Q
    |||||||| || | ||||||||||||||| ||||||||   ||||||||||||||||||    
T  10229 ttgcaaaagcactgcatttacttcacttcatgcaagttgtgcaatgaatgcattataat 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 1418 - 1376
Alignment:
Q  4 tatatacatgtattctaagctacatttcgcctatgtgtcacct 46  Q
    |||||||||||||||||| |||||||| |||||||||| ||||    
T  1418 tatatacatgtattctaacctacattttgcctatgtgtaacct 1376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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