View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12468_low_4 (Length: 385)
Name: NF12468_low_4
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12468_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 162 - 366
Target Start/End: Complemental strand, 40439735 - 40439531
Alignment:
| Q |
162 |
cgacggccattcatggatcaccccggcggccacgctcctctttctgaacccaacactccaaccaccccaagacccaccctattcctctccacttccggca |
261 |
Q |
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| T |
40439735 |
cgacggccattcatggatcaccccggcggccacgctcctctttctgaacccaacaccccaaccaccccaagacccaccctattcctctccacttcgggca |
40439636 |
T |
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| Q |
262 |
aagcccttcttgtctcaaactccaacaaatccctcgtcatttccaattccggcaaacgcctcgtcgagacacccagcaagaaaaaatatgttaaacaggt |
361 |
Q |
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| T |
40439635 |
aagcccttcttgtctcaaactccaacaaatccctcgtcatttccaattccggcaaacgcctcgtcgagacaccctgcaagaaaaaatatgttaaacaggt |
40439536 |
T |
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| Q |
362 |
caccg |
366 |
Q |
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||||| |
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| T |
40439535 |
caccg |
40439531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 103
Target Start/End: Complemental strand, 40439893 - 40439794
Alignment:
| Q |
4 |
ggaggagcagagaaagcaacgatatttgtttggagtttttccgccaatggtgcagatcaacaaaaacagaggagggattgaagggttgaggaatggggca |
103 |
Q |
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|||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40439893 |
ggaggaccaaagaaagcaacgatatttgtttggagttattccgccaatggtgcagatcaacaaaaacagaggagggattgaagggttgaggaatggggca |
40439794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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