View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12468_low_6 (Length: 321)
Name: NF12468_low_6
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12468_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 21195811 - 21195517
Alignment:
| Q |
17 |
aatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttga |
116 |
Q |
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| T |
21195811 |
aatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttga |
21195712 |
T |
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| Q |
117 |
gggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195711 |
gggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacatt |
21195612 |
T |
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| Q |
217 |
gttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21195611 |
gttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
21195517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 27251560 - 27251266
Alignment:
| Q |
17 |
aatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttga |
116 |
Q |
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| T |
27251560 |
aatttgaaatacaaagaaagaataatgttatgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttga |
27251461 |
T |
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| Q |
117 |
gggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacatt |
216 |
Q |
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| T |
27251460 |
gggtatagtcagcaactgttgcaggagaggccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacatt |
27251361 |
T |
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| Q |
217 |
gttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27251360 |
gttctcagcaaggtagaagaaaacctcagcccaaaccttttgtgctacttcataagttctatcaataccatgttctccatccagcaagatctctg |
27251266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 47 - 311
Target Start/End: Complemental strand, 27268316 - 27268052
Alignment:
| Q |
47 |
tgtatttggttagtgtcacataccatgataccagggacagcagggggaattctcctgtgaaggagcttgagggtatagtcagcaactgttgcaggagagg |
146 |
Q |
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|||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
27268316 |
tgtatttggttagtttcacataccatgataccagggacggctggggggattctcctgtgaaggagcttgaggatatagtcagcaactgttgcagaagaga |
27268217 |
T |
|
| Q |
147 |
ccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacattgttctcagcaaggtagaagaaaacctcagc |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268216 |
ccttgtccttggactcagctcctggggtaaccatgctaggcttgaggagaatgccctcaaattggacattgttctcagcaaggtagaagaaaacctcagc |
27268117 |
T |
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| Q |
247 |
ccaaaccttttgtgctacttcataagttctgtcaataccatgttctccatccagcaagatctctg |
311 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
27268116 |
ccaaaccttttgtgctacttcaaaagttctgtcaatactatgttctccatcaagcaagatctctg |
27268052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Original strand, 49364671 - 49364732
Alignment:
| Q |
160 |
ctcagctcctggggtaaccatgctaggcttgaggagaataccctcaaattggacattgttct |
221 |
Q |
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|||||| || || |||||||||||||||||||| | ||| |||||||| |||||||||||| |
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| T |
49364671 |
ctcagcaccaggtgtaaccatgctaggcttgagcaaaattccctcaaaaaggacattgttct |
49364732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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