View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12468_low_7 (Length: 301)
Name: NF12468_low_7
Description: NF12468
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12468_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 14 - 286
Target Start/End: Original strand, 31988287 - 31988559
Alignment:
| Q |
14 |
agagccaagtaacaggtgcaagccctatattaaagaaagcaacatagaaatatgttgctataatactaagtgttaaggcccataaaacttcttcattggc |
113 |
Q |
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| T |
31988287 |
agagccaagtaacaggtgcaagccctatattaaagaaagcaacatagaaatatgttgctataatactaagtgttaaggcccataaaacttcttcattggc |
31988386 |
T |
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| Q |
114 |
atgctccaccattgtcaaactgaaccctaaggctgtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatc |
213 |
Q |
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| T |
31988387 |
atgctccaccattgtcaaactgaaccctaaggctgtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatc |
31988486 |
T |
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| Q |
214 |
aaaaataaagcaagtacaagaaaaataatctttgttaatccaacaccaattgttgcaagcaaaagattttctt |
286 |
Q |
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| T |
31988487 |
aaaaataaagcaagtacaagaaaaataatctttgttaatccaacaccaattgttgcaagcaaaagattttctt |
31988559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 286
Target Start/End: Original strand, 33161590 - 33161728
Alignment:
| Q |
148 |
gtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttctaccaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttg |
247 |
Q |
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| T |
33161590 |
gtaagtccaataatcattcctccggtgctaatttgcaaaagtcgtcttctaccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttg |
33161689 |
T |
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| Q |
248 |
ttaatccaacaccaattgttgcaagcaaaagattttctt |
286 |
Q |
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| T |
33161690 |
ttaaacctactccaatagttgcaagtaaaagcttttctt |
33161728 |
T |
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