View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12469_high_4 (Length: 314)

Name: NF12469_high_4
Description: NF12469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12469_high_4
NF12469_high_4
[»] chr7 (3 HSPs)
chr7 (35-182)||(32958619-32958762)
chr7 (199-267)||(30625741-30625809)
chr7 (18-64)||(32958763-32958809)
[»] chr3 (2 HSPs)
chr3 (195-242)||(11677729-11677776)
chr3 (215-270)||(11677775-11677836)
[»] scaffold0300 (2 HSPs)
scaffold0300 (232-270)||(7093-7131)
scaffold0300 (195-235)||(7190-7230)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 35 - 182
Target Start/End: Complemental strand, 32958762 - 32958619
Alignment:
Q  35 aagtgaatattatgccgattccgataacatttctgtaaaataaatttaagtcaaagagttccccaaatattatttctagatgaaaaccaaacgccacaaa 134  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    |    
T  32958762 aagtgaatattatgccgattccgacaacatttctgtaaaataaatctaagtcaaagagttccccaaatattatttctagatgaaaaccaaacgcc----a 32958667  T
Q  135 catattagcgtaactactgtactacatgtttatacatgagaggcccaa 182  Q
    ||||| | |||||||| |||||||||||||||||||||||||||||||    
T  32958666 catatcaacgtaactattgtactacatgtttatacatgagaggcccaa 32958619  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 199 - 267
Target Start/End: Original strand, 30625741 - 30625809
Alignment:
Q  199 ttgaacaccaaccatgatatgacagaagagagcgagcacaaaatgaaatggagtttccatcttggatga 267  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  30625741 ttgaacaccaaccataatatgacataagagagcgagcacaaaatgaaatagagtttccatcttggatga 30625809  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 32958809 - 32958763
Alignment:
Q  18 ttcaaacaagcctaaagaagtgaatattatgccgattccgataacat 64  Q
    ||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  32958809 ttcaaacaagcttaaagaagtgaagattatgctgattccgacaacat 32958763  T

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Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 11677729 - 11677776
Alignment:
Q  195 agacttgaacaccaaccatgatatgacagaagagagcgagcacaaaat 242  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11677729 agacttgaacaccagccatgatatgacagaagagagcgagcacaaaat 11677776  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 11677775 - 11677836
Alignment:
Q  215 atatgacagaagagag-----cgagcacaaaatgaaat-ggagtttccatcttggatgaggc 270  Q
    ||||||||||||||||     ||||||||||||||||| || ||||||||||||||||||||    
T  11677775 atatgacagaagagagcgagccgagcacaaaatgaaatgggcgtttccatcttggatgaggc 11677836  T

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Target: scaffold0300 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 7131 - 7093
Alignment:
Q  232 gagcacaaaatgaaatggagtttccatcttggatgaggc 270  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7131 gagcacaaaatgaaatgaagtttccatcttggatgaggc 7093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 7230 - 7190
Alignment:
Q  195 agacttgaacaccaaccatgatatgacagaagagagcgagc 235  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  7230 agacttgaacaccagccatgatatgacaggagagagcgagc 7190  T

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