View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12469_low_1 (Length: 525)
Name: NF12469_low_1
Description: NF12469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12469_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 20 - 522
Target Start/End: Complemental strand, 6388302 - 6387800
Alignment:
| Q |
20 |
tgcctttctgacgtataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcatac |
119 |
Q |
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| T |
6388302 |
tgcctttctgacgtataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcatac |
6388203 |
T |
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| Q |
120 |
cacgatagtcattcttctcttctcattgatgatccaaagaaaattgcaaccaggtgatatatatagatataaacttttcttccttagaaactaaattgaa |
219 |
Q |
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| T |
6388202 |
cacgatagtcattcttctcttctcattgatgatccaaagaaaattgcaaccaggtgatatatatagatataaacttttcttccttagaaactaaattgaa |
6388103 |
T |
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| Q |
220 |
tgtcgaaaatccctacttacttttcaaatttctacacaacatgtagttacatgtccacctggtttgttttggatatctgctcaacagcaccacttgagcc |
319 |
Q |
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| T |
6388102 |
tgtcgaaaatccctacttacttttcaaatttctacacaacatgtagttacatgtccacctggtttgttttggatatctgctcaacagcaccacttgagcc |
6388003 |
T |
|
| Q |
320 |
tattagtctcctcttcactacttatgacagtgagcttggtttcaaacttcttaacatgttgcgattatggcgcctgagacgagtcagttctctgtttgca |
419 |
Q |
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| T |
6388002 |
cattagtctcctcttcactacttatgacagtgagcttggtttcaaacttcttaacatgttgcgattatggcgcctgagacgagtcagttctctgtttgca |
6387903 |
T |
|
| Q |
420 |
aggtttgccagcatgttatatttaatttcatggttctgttttcatcaagtcttctatttactagaatatttcagtgctttcttccttacttgcacctatg |
519 |
Q |
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| T |
6387902 |
aggtttgccagcatgttatatttaatttcatggttctgttttcatcaattcttctatttactagaatatttcagtgctttcttccttacttgcacctttg |
6387803 |
T |
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| Q |
520 |
ctt |
522 |
Q |
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| T |
6387802 |
ctt |
6387800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 18171824 - 18171703
Alignment:
| Q |
47 |
actattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcataccacgatagtcattcttctcttctcatt |
146 |
Q |
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| T |
18171824 |
actattcatcatagataacattgtgaatggtttctttgcaattgacatagtgatgacattctttgttgcatatcttgataaccattcttaccttcttatt |
18171725 |
T |
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| Q |
147 |
gatgatccaaagaaaattgcaa |
168 |
Q |
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| T |
18171724 |
gatgatcataagaaaattgcaa |
18171703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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