View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12469_low_2 (Length: 442)
Name: NF12469_low_2
Description: NF12469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12469_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Original strand, 34671084 - 34671498
Alignment:
| Q |
12 |
atgaaatcacctggccaaatgcttatagaggtaagaaaccgaataagaatgtatatgatttgaaaattttatagtctatgctatgtgaactcatttgcat |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34671084 |
atgaaatcacctggccaaatgcttatagaggtaagaaaccgaataagaatgtatatgatttgaaaattttatagtctatgctatgtgaactcatttgcat |
34671183 |
T |
|
| Q |
112 |
tgttctgctgcagattctttgtgaagatcaaggtttcttccttgagatagtcgacataattcgaggtttcgggctgaatatcttaaaagcaaagatggaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34671184 |
tgttctgctgcagattctttgtgaagatcaaggtttcttccttgagatagtcgacataattcgaggtttcgggctgaatatcttaaaagcaaagatggaa |
34671283 |
T |
|
| Q |
212 |
acaaggaagaaaaaactatgggcacactttattgttgaggtaaaatatttaatatttgattgaaatatttaaaataaaacaagtaaatggtggcatataa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34671284 |
acaaggaagaaaaaactatgggcacactttattgttgaggtaaaatatttaatatttgattgaaatatttaaaataaaacaagtaaatggtggcatataa |
34671383 |
T |
|
| Q |
312 |
gtgatttcaatttttactttgtcatttttctacttaagctaaaaatgtcggtttacatatcaattatcgtattgtacaacaggcaaatagacatgtgacg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34671384 |
gtgatttcaatttttactttgtcatttttctacttaagctaaaaatgtcggtttacatatcaattatcgtattgtacaacaggcaaatagacatgtgacg |
34671483 |
T |
|
| Q |
412 |
aggatagatgtgttt |
426 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34671484 |
aggatagatgtgttt |
34671498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University