View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12469_low_3 (Length: 349)
Name: NF12469_low_3
Description: NF12469
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12469_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 65 - 336
Target Start/End: Complemental strand, 14195254 - 14194979
Alignment:
| Q |
65 |
tcatacttcaacatatcaaatgtgtctacggccttttattatttgcactt---taatattttaattgtatataataatggaacaaatgaaatgaataaca |
161 |
Q |
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| T |
14195254 |
tcatactttaacatatcaaatgtgtctacggccttttattatttgcacttctttagtattttaattgtatataataatggaacaaatgaaatgaataaca |
14195155 |
T |
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| Q |
162 |
aagttataattaatccttttt-cattcactttccaagaattaaaatgagaattttgttctatcccgtcataaaatactaaaataatgaatgaaagttcta |
260 |
Q |
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| T |
14195154 |
aagttataattaatcattttttcattcactttccaagaattaaaatgaaaattttgttctatcccgtcataaaatactaaaataatgaatgaaaattcta |
14195055 |
T |
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| Q |
261 |
ttccattcactacaagaaaatgaggtaatacatacacacggaatccagtgaggattcatagatatggtttcttctc |
336 |
Q |
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| T |
14195054 |
ttccattcactacaagaaaataaggtaatacatacacacggaatatagtgaggattcatagatatggtttcttctc |
14194979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37269631 - 37269599
Alignment:
| Q |
19 |
ctaggctcttttctatatttaatatgctgattc |
51 |
Q |
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| T |
37269631 |
ctaggctcttttctatatataatatgctgattc |
37269599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 42941536 - 42941568
Alignment:
| Q |
19 |
ctaggctcttttctatatttaatatgctgattc |
51 |
Q |
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| T |
42941536 |
ctaggctcttttctatatataatatgctgattc |
42941568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 50481277 - 50481309
Alignment:
| Q |
19 |
ctaggctcttttctatatttaatatgctgattc |
51 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
50481277 |
ctaggctcttttctatatataatatgctgattc |
50481309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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