View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_13 (Length: 433)
Name: NF1246_high_13
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 57 - 424
Target Start/End: Complemental strand, 39001905 - 39001534
Alignment:
| Q |
57 |
tagatttccaacatgaaaatagatattacatcatacttgtttataaatcatgattaagtaatttctctgaaacttttcgcctcaaatcaattatcttatg |
156 |
Q |
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| T |
39001905 |
tagatttccaacatgaaaatagatagtacatcatacttgtttataaatcatgattaagtaatttctctgaaacttttcgcctcaaatcaattatcttatg |
39001806 |
T |
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| Q |
157 |
tttcatttcaaaataacattttctcagcattaattaaagggtat----atcaatgatcaaaatctttggatgagttgtcaatatcacagattattcatca |
252 |
Q |
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| T |
39001805 |
tttcatttcaaaataacattttctcaccattaattaaagggtatgaggatcaatgatcaaaatctttggatgagttgtcaatatcacagattattcatca |
39001706 |
T |
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| Q |
253 |
aaacataaaggaaaagaagagaggcaatagagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaa |
352 |
Q |
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| T |
39001705 |
aaacataaaggaaaagaagagaggcaatagagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaa |
39001606 |
T |
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| Q |
353 |
gatatctgtaaaattagcatcaagatatgaattcatatttggtttaaatcaatacaactatttcagaataat |
424 |
Q |
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| T |
39001605 |
gatatctgtaaaactagcatcaagatatgaattcatatttggtttaaatcaatacaactacttcagaataat |
39001534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 281 - 392
Target Start/End: Complemental strand, 38997517 - 38997406
Alignment:
| Q |
281 |
agagaacctgacactggatgtcgattcctagctgcttgtattccaaattagtgcatgcagagaacattgcaagatatctgtaaaattagcatcaagatat |
380 |
Q |
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| T |
38997517 |
agagaacctggcactggatgtcaatcccgtggtgtttgtattccaaactggtgcatgcagagaacattgcaagatacctgtaaaattagcatcgagatat |
38997418 |
T |
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| Q |
381 |
gaattcatattt |
392 |
Q |
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| T |
38997417 |
ggattcaaattt |
38997406 |
T |
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