View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_15 (Length: 423)
Name: NF1246_high_15
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_15 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 11240971 - 11240630
Alignment:
| Q |
6 |
aatccccggtactcacgccaactcaagcgtcctcaacttgcacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaagtttacat |
105 |
Q |
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|||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240971 |
aatccccgatactcacgccgactcaagcgtcctcaacttggacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaagtttacat |
11240872 |
T |
|
| Q |
106 |
tcaacattaagaaactacgaattcaagtacagtatattagaattttcaaatatcacatatacacttattcttaaatcaacaacatcagtcatacaagagt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240871 |
tcaacattaagaaactacgaattcaagtacagtatattagaattttcaaatatcacatatacacttattcttaaatcaacaacatcagtcatacaagagt |
11240772 |
T |
|
| Q |
206 |
gatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaatttacaaaatacacttgcattatcatataaaagtataaccatat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
11240771 |
gatcatactcaaataaacaccaagagcttcttacatcattctccattcatcataaatcaacaaaatacactagcattatcatataaaagtataaccatat |
11240672 |
T |
|
| Q |
306 |
actcatatccacttatgttcaaataaagcacataatccacat |
347 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240671 |
actcatatccacttatgttcaaataaagcacataatccacat |
11240630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 187 - 347
Target Start/End: Complemental strand, 11240533 - 11240373
Alignment:
| Q |
187 |
acatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaatttacaaaatacacttgcattatca |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11240533 |
acatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaatttacaaaatacactagcattatca |
11240434 |
T |
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| Q |
287 |
tataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatccacat |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11240433 |
tataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatccacat |
11240373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 27 - 203
Target Start/End: Complemental strand, 24070898 - 24070723
Alignment:
| Q |
27 |
ctcaagcgtcctcaacttgcacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaagtttacattcaacattaagaaactacgaa |
126 |
Q |
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||||||||||||| || ||||||||||||| ||||||||||||||||| | ||||| ||||| |||||||||||| |||||||||||||||||||| ||| |
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| T |
24070898 |
ctcaagcgtcctccacctgcacgtctacactattttacaatggcgaggcggcaaaactcactagagggtaagtttccattcaacattaagaaactaagaa |
24070799 |
T |
|
| Q |
127 |
ttcaagtacagtatattagaattttcaaatatcacatatacacttattcttaaatcaacaacatcagtcatacaaga |
203 |
Q |
| |
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|||||||| |||||| ||| | |||||| ||| |||||| | ||| |||||||||||||| | |||||||||| |
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| T |
24070798 |
ttcaagtatagtataatagga-tttcaagtattacatatctatactttcataaatcaacaacattattcatacaaga |
24070723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 14 - 140
Target Start/End: Original strand, 14999552 - 14999678
Alignment:
| Q |
14 |
gtactcacgccaactcaagcgtcctcaacttgcacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaagtttacattcaacatt |
113 |
Q |
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|||||||| || |||||||||||||||| | ||||||||||||||||||||||| ||| | ||||||| ||||| || ||||||||||||||||||||| |
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| T |
14999552 |
gtactcactccgtctcaagcgtcctcaacctacacgtctacaccattttacaatgacgaagcgacaaaaatcactagacggtaagtttacattcaacatt |
14999651 |
T |
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| Q |
114 |
aagaaactacgaattcaagtacagtat |
140 |
Q |
| |
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||||||||| ||||||||||| ||||| |
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| T |
14999652 |
aagaaactatgaattcaagtatagtat |
14999678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 347 - 409
Target Start/End: Complemental strand, 11225687 - 11225625
Alignment:
| Q |
347 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgccatgtccttcgttaatatt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11225687 |
ttaaaaaatgggtgtgtcaaattttaatttttgtgctcatgtgtcatgtccttcgttaatatt |
11225625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 19410488 - 19410299
Alignment:
| Q |
16 |
actcacgccaactcaagcgtcctcaacttgcacgtctacaccatttt-acaatggcgaggtgacaaaagtcactggagggtaagtttacattcaacatta |
114 |
Q |
| |
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|||||| ||| |||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
19410488 |
actcactccatctcaagcgtcctcaacctgcacgtctacaccatttttacaatggtgaggcgacaaaagtcactggagggtaaatttacattcaacatta |
19410389 |
T |
|
| Q |
115 |
agaaactacgaattcaagtacagtatattagaattttcaaatatcacatatacacttattcttaaatcaacaacatcagtcatacaagagt |
205 |
Q |
| |
|
||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| | | |||||||||||||| | |||||||||||| |
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| T |
19410388 |
agaaactacaaattcaagtatagtataatagaa-tttcaaatatcacatatacatacttgcataaatcaacaacattaatcatacaagagt |
19410299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 19568288 - 19568159
Alignment:
| Q |
38 |
tcaacttgcacgtctacaccattttacaatggcgaggtg---acaaaagtcactggagggtaagtttacattcaacattaagaaactacgaattcaagta |
134 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||| | || | |||| |||| ||||||||||||||||||||| |||| || |||||||||| |
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| T |
19568288 |
tcaacctgcatgtctacaccattttacaatggcgaggtggtcaaaacaaccactagaggataagtttacattcaacattaaaaaacaacaaattcaagta |
19568189 |
T |
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| Q |
135 |
cagtatattagaattttcaaatatcacatat |
165 |
Q |
| |
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||| || ||| | ||||||||||||||||| |
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| T |
19568188 |
tagtttaatagga-tttcaaatatcacatat |
19568159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 23278499 - 23278431
Alignment:
| Q |
95 |
taagtttacattcaacattaagaaactacgaattcaagtacagtatattagaattttcaaatatcacata |
164 |
Q |
| |
|
||||||||||||||| ||||||||| | ||||||||||| | |||| ||||| |||||||||||||||| |
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|
| T |
23278499 |
taagtttacattcaagattaagaaataatgaattcaagtataatataatagaa-tttcaaatatcacata |
23278431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 4e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 170 - 347
Target Start/End: Complemental strand, 11864482 - 11864305
Alignment:
| Q |
170 |
ttattcttaaatcaacaacatcagtcatacaagagtgatcatactcaaataaacaccaagagcttcttacatcattctccattcattataaatttacaaa |
269 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
11864482 |
ttattcataaattaacaacactagtcatacaagagtgatcatactcaaataagcaccaagagcttcttacatcattctccattcatcataaatcatcaaa |
11864383 |
T |
|
| Q |
270 |
atacacttgcattatcatataaaagtataaccatatactcatatccacttatgttcaaataaagcacataatccacat |
347 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||||| ||| || |||| ||| |||| |||||||||||||||||||| |
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|
| T |
11864382 |
ttacactagcatcatcatttaaaagtataaccatagacttatctccatctatattcacataaagcacataatccacat |
11864305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 168
Target Start/End: Original strand, 20880334 - 20880416
Alignment:
| Q |
85 |
cactggagggtaagtttacattcaacattaagaaactacgaattcaagtacagtatattagaattttcaaatatcacatataca |
168 |
Q |
| |
|
||||||||| ||| |||||| | ||||||||||||||| ||||||||||| |||| ||||| ||||||||||| |||||||| |
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| T |
20880334 |
cactggaggataaatttacaattaacattaagaaactatgaattcaagtatagtacgatagaa-tttcaaatatcgcatataca |
20880416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 9959913 - 9960053
Alignment:
| Q |
27 |
ctcaagcgtcctcaacttgcacgtctacaccattttacaatggcgaggtgacaaaagtcactggagggtaagtttacattcaacattaagaaactacgaa |
126 |
Q |
| |
|
||||||| ||||| || ||||||||||||| |||||||||||| || | ||||| |||||| |||| |||||||||||||||||||||||||||| ||| |
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|
| T |
9959913 |
ctcaagcatcctctacctgcacgtctacacaattttacaatggtgatgcaacaaa-gtcacttgaggataagtttacattcaacattaagaaactatgaa |
9960011 |
T |
|
| Q |
127 |
ttcaagtacagtatattagaattttcaaatatcacatatacac |
169 |
Q |
| |
|
|||||||| |||||| | | ||||||||||||||||||||| |
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|
| T |
9960012 |
ttcaagtatagtataaca-agatttcaaatatcacatatacac |
9960053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 43937269 - 43937409
Alignment:
| Q |
12 |
cggtactcacgccaactcaagcgtcctcaacttgcacgtctacaccattttacaatggcgaggtgac--aaaagtcactggagggtaagtttacattcaa |
109 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| |||||||||||||||||||| ||| ||| |||| ||||||| |||||| |||||||||| |
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|
| T |
43937269 |
cggtactcacgcggactcaagcgtccttaacctgcacctctacaccattttacaatggtaaggcgaccaaaaaaccactggatggtaagattacattcaa |
43937368 |
T |
|
| Q |
110 |
cattaagaaactacgaattcaagtacagtatattagaattt |
150 |
Q |
| |
|
||| |||||||||||| ||||| | |||||||||| |||| |
|
|
| T |
43937369 |
cataaagaaactacgatctcaagcatagtatattaggattt |
43937409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 13250911 - 13250839
Alignment:
| Q |
95 |
taagtttacattcaacattaagaaactacgaattcaagtacagtatattagaattttcaaatatcacatataca |
168 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| ||||| ||| | |||||||||||||||||||| |
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|
| T |
13250911 |
taagtttacattaaacattaagaaactatgaattcaagtatggtataatagga-tttcaaatatcacatataca |
13250839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 3255496 - 3255555
Alignment:
| Q |
91 |
agggtaagtttacattcaacattaagaaactacgaattcaagtacagtatattagaattt |
150 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||| || ||||||| |||| |
|
|
| T |
3255496 |
agggtaagtttacattcaacattaagaaattatgaattcaagtatagcatattaggattt |
3255555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 1610438 - 1610510
Alignment:
| Q |
79 |
aaaagtcactggagggtaagtttacattcaacattaagaaactacgaattcaagtacagtatattagaatttt |
151 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||| |||||| |||||| ||||| | | |||||||| ||||| |
|
|
| T |
1610438 |
aaaagccactggagagtaagattacattcaacataaagaaattacgaactcaagcataatatattaggatttt |
1610510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 205
Target Start/End: Complemental strand, 368666 - 368501
Alignment:
| Q |
44 |
tgcacgtctacaccattttacaatggcgaggtgac------aaaagtcactggagggtaagtttacattcaacattaa-gaaactacgaattcaagtaca |
136 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || | |||||||| ||||||||||||||||||||| |||||||||||| || || | |
|
|
| T |
368666 |
tgcacgtctacaccattttacaatggcgaaatggccaaccaaacaaccactggagcataagtttacattcaacattaacaaaactacgaatt-aaatata |
368568 |
T |
|
| Q |
137 |
gtatattagaattttcaaatatcacatatacacttattcttaaatcaacaacatcagtcatacaagagt |
205 |
Q |
| |
|
||||| ||| | |||||||||||||||||||| ||| |||||||||||||| | |||||||||||| |
|
|
| T |
368567 |
gtataatagga-tttcaaatatcacatatacatactttcataaatcaacaacatta-tcatacaagagt |
368501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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