View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_high_22 (Length: 339)

Name: NF1246_high_22
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_high_22
NF1246_high_22
[»] chr8 (2 HSPs)
chr8 (233-330)||(44663638-44663734)
chr8 (233-329)||(35348994-35349090)
[»] chr6 (2 HSPs)
chr6 (233-330)||(31444774-31444870)
chr6 (233-325)||(33054123-33054214)
[»] chr2 (2 HSPs)
chr2 (233-330)||(4453781-4453877)
chr2 (233-305)||(9208573-9208645)
[»] chr4 (4 HSPs)
chr4 (233-310)||(32651244-32651321)
chr4 (233-310)||(41810174-41810251)
chr4 (233-329)||(38467666-38467762)
chr4 (233-325)||(3649874-3649965)
[»] chr3 (4 HSPs)
chr3 (233-310)||(52130792-52130869)
chr3 (233-305)||(46233942-46234014)
chr3 (233-305)||(11394021-11394093)
chr3 (233-310)||(19766017-19766093)
[»] chr7 (3 HSPs)
chr7 (233-330)||(21820129-21820225)
chr7 (241-310)||(7841298-7841367)
chr7 (233-305)||(16262661-16262733)
[»] chr1 (5 HSPs)
chr1 (237-310)||(17726039-17726112)
chr1 (233-299)||(22368184-22368250)
chr1 (237-310)||(14184692-14184765)
chr1 (233-305)||(32440628-32440700)
chr1 (233-264)||(7608406-7608437)
[»] scaffold0152 (1 HSPs)
scaffold0152 (233-327)||(10198-10291)
[»] scaffold0003 (1 HSPs)
scaffold0003 (233-327)||(36966-37059)


Alignment Details
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 44663734 - 44663638
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaacc 330  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||    
T  44663734 taacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaatattagcccttggatccaacc 44663638  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 233 - 329
Target Start/End: Original strand, 35348994 - 35349090
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 329  Q
    ||||||||| |||||||||||||| ||||||||||  ||| |||| ||||||||||    |||||||||||||||| ||| | || || ||||||||    
T  35348994 taacttatttctaatcctagttaacactccaattaacacttaaaatcctaattctacttattttaggcgccaatcagtatcaaccatttgatctaac 35349090  T

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Target: chr6 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 31444774 - 31444870
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaacc 330  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||| ||||    
T  31444774 taacttattcctaatcctagttaacactccaattactacttaaaaccctaattct-ataattttaggcgccaatcaatattagcccttggatccaacc 31444870  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 325
Target Start/End: Complemental strand, 33054214 - 33054123
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatc 325  Q
    ||||||||||||||||||| |||| ||| ||||||  ||| ||||||||||  || |  |||||||||||||||||||  || ||||||||||    
T  33054214 taacttattcctaatcctaattaacactacaattaacacttaaaaccctaaacct-acttttttaggcgccaatcaatcctaacccttggatc 33054123  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 4453781 - 4453877
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaacc 330  Q
    |||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| || |||||||||||||||||||||| |||||||||||||||    
T  4453781 taacttattcctaatcctagttaacactccaattaccacttaaaaccctaattctatga-ttttaggcgccaatcaatattaacccttggatctaacc 4453877  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 9208573 - 9208645
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 305  Q
    |||||||||||||||||||||||| ||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  9208573 taacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 9208645  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 32651321 - 32651244
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  32651321 taacttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 32651244  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 41810174 - 41810251
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    ||||||||| |||||||||||||| ||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  41810174 taacttatttctaatcctagttaacactccaattaccacttaaaaccctaattttaagatttttaagcgccaatcaat 41810251  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 233 - 329
Target Start/End: Complemental strand, 38467762 - 38467666
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaac 329  Q
    |||||||||  ||||||||||||| ||||||||||  ||| |||||||||||||||    |||||||||||||||| |||||||| |||||||||||    
T  38467762 taacttatttataatcctagttaacactccaattaacacttaaaaccctaattctacttattttaggcgccaatcagtattagccattggatctaac 38467666  T

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Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 233 - 325
Target Start/End: Original strand, 3649874 - 3649965
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatc 325  Q
    |||||||||||||||||||||||| ||||||||||  ||| |||||||||| ||| |  |||||||||||||||||||  || ||||||||||    
T  3649874 taacttattcctaatcctagttaacactccaattaacacttaaaaccctaaatct-acttttttaggcgccaatcaatcctaacccttggatc 3649965  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 52130792 - 52130869
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    ||||||||| |||||||||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  52130792 taacttatttctaatcctaggtaacactccaattaccacttaaaaccctaattctaagatttttaggcgccaatcaat 52130869  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 46234014 - 46233942
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 305  Q
    |||||||||||||||||||||||| ||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  46234014 taacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 46233942  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 305
Target Start/End: Original strand, 11394021 - 11394093
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 305  Q
    ||||||||| |||||||||||||| ||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  11394021 taacttatttctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 11394093  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 19766017 - 19766093
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    ||||||||| |||||||||||||| ||||||||||  |||  |||||||||| || |  |||||||||||||| ||||    
T  19766017 taacttatttctaatcctagttaacactccaattaacactccaaaccctaatcct-acttttttaggcgccaaacaat 19766093  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 233 - 330
Target Start/End: Complemental strand, 21820225 - 21820129
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatctaacc 330  Q
    ||||||||||||||||||| |||| ||||||||||  ||| |||||| ||||||||  |||||||||||||||||| |||||||| ||||||||||||    
T  21820225 taacttattcctaatcctaattaacactccaattaacacttaaaaccataattctac-atttttaggcgccaatcagtattagccattggatctaacc 21820129  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 310
Target Start/End: Original strand, 7841298 - 7841367
Alignment:
Q  241 tcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    |||||||||||||||| |||| |||||| ||| |||||||||||||||||||||||||| | ||||||||    
T  7841298 tcctaatcctagttaacactctaattaccacttaaaaccctaattctaagatttttaggtgtcaatcaat 7841367  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 16262733 - 16262661
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 305  Q
    |||||||||||||||||||||||| ||| ||||||  |||  ||||||||||| |||| | |||||||||||||    
T  16262733 taacttattcctaatcctagttaacacttcaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 16262661  T

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Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 17726039 - 17726112
Alignment:
Q  237 ttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    |||||||||||||||||||| ||||||||||  ||| |||||||||||||||||||||||||||||||| ||||    
T  17726039 ttattcctaatcctagttaacactccaattatcacttaaaaccctaattctaagatttttaggcgccaaacaat 17726112  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 22368250 - 22368184
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttagg 299  Q
    |||||||||||||||||||||||| ||| ||||||  ||| ||||||||||||||||||||||||||    
T  22368250 taacttattcctaatcctagttaacacttcaattatcacttaaaaccctaattctaagatttttagg 22368184  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 310
Target Start/End: Original strand, 14184692 - 14184765
Alignment:
Q  237 ttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaat 310  Q
    ||||| |||||  ||||||| |||| |||||| ||| ||||| |||||||||||||||||||||||||||||||    
T  14184692 ttatttctaattatagttaacactctaattaccacttaaaactctaattctaagatttttaggcgccaatcaat 14184765  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 32440700 - 32440628
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactact-aaaaaccctaattctaagatttttaggcgccaa 305  Q
    |||||||||||||||||||||||| ||||||||||  |||  ||||||||||| |||| | |||||||||||||    
T  32440700 taacttattcctaatcctagttaacactccaattatcactccaaaaccctaatcctaa-agttttaggcgccaa 32440628  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 264
Target Start/End: Complemental strand, 7608437 - 7608406
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaa 264  Q
    ||||||||||||||||||||||||||||||||    
T  7608437 taacttattcctaatcctagttaaaactccaa 7608406  T

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Target: scaffold0152 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 10198 - 10291
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatcta 327  Q
    ||||||||||| |||||||||||| ||||||||||  |||  ||||||||||||| |  |||||||||||||| ||||  |||||||||||||||    
T  10198 taacttattcccaatcctagttaacactccaattaacactccaaaccctaattct-acttttttaggcgccaaacaatcctagcccttggatcta 10291  T

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Target: scaffold0003 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 327
Target Start/End: Complemental strand, 37059 - 36966
Alignment:
Q  233 taacttattcctaatcctagttaaaactccaattactactaaaaaccctaattctaagatttttaggcgccaatcaatattagcccttggatcta 327  Q
    ||||||||||||||||||| |||| ||||||||||  |||  ||| |||||||||    |||||||||||||| ||||  |||||||||||||||    
T  37059 taacttattcctaatcctaattaacactccaattaacacttcaaatcctaattct-tcttttttaggcgccaaacaatcctagcccttggatcta 36966  T

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