View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_32 (Length: 268)
Name: NF1246_high_32
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 1200554 - 1200323
Alignment:
| Q |
25 |
catcaaaaggttctttatagggtaaggtttatccaccacttataatcaatattttagtcatatcaatgctaccataaatattttattggcacaactaatg |
124 |
Q |
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| T |
1200554 |
catcaaaaggttctttatagggtaaggtttatccaccacttataatcaatattttagtcatatc-atgctaccataaattttttattggcacaactaatg |
1200456 |
T |
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| Q |
125 |
taaac-ataaaaat-ggaaaaagactagtcatggaatttcatcatggattgattg-annnnnnnnnnnnng-tttaaatattttgtggggttaagtaagg |
220 |
Q |
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| T |
1200455 |
taaacaataaaaataggaaaaagactagtcatggaatttcatcatggattggttgtatttttttttttttgttttaaatattttgtggggttaagtaagg |
1200356 |
T |
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| Q |
221 |
tatctggcattggaacctgcaaaggtcttgtat |
253 |
Q |
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| T |
1200355 |
tatctggcattggaacctgcaaaggtcttgtat |
1200323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 26 - 158
Target Start/End: Original strand, 1225408 - 1225540
Alignment:
| Q |
26 |
atcaaaaggttctttatagggtaaggtttatccaccacttataatcaatattttagtcatatcaatgctaccataaatattttattggcacaactaatgt |
125 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1225408 |
atcaaaaggttctttatagggcaaggtttatccaccatttataatcaatattttagtcatatcaatgctaccataaactttttattggcacaactaatgt |
1225507 |
T |
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| Q |
126 |
aaacataaaaatggaaaaagactagtcatggaa |
158 |
Q |
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|||||||| |||||||||||| ||||||||||| |
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| T |
1225508 |
aaacataataatggaaaaagattagtcatggaa |
1225540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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