View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_33 (Length: 267)
Name: NF1246_high_33
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 8913630 - 8913855
Alignment:
| Q |
29 |
agctctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatag |
128 |
Q |
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| T |
8913630 |
agctctttgatccaatccaattatgtggtcacacaataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatag |
8913729 |
T |
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| Q |
129 |
ttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgg |
228 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8913730 |
ttggaatctcaatctgaacctttcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgg |
8913829 |
T |
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| Q |
229 |
gaaataaagtaaagagcatttggttc |
254 |
Q |
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|||||||| ||||||||||||||||| |
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| T |
8913830 |
gaaataaactaaagagcatttggttc |
8913855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 254
Target Start/End: Original strand, 8346613 - 8346838
Alignment:
| Q |
30 |
gctctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatag |
128 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
8346613 |
gctctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatag |
8346712 |
T |
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| Q |
129 |
ttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgg |
228 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8346713 |
ttggaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgg |
8346812 |
T |
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| Q |
229 |
gaaataaagtaaagagcatttggttc |
254 |
Q |
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| T |
8346813 |
gaaatacactaaagagcatttggttc |
8346838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 30 - 254
Target Start/End: Complemental strand, 42823008 - 42822783
Alignment:
| Q |
30 |
gctctttgatccaatccaattatgtggtcacac-aataacatgaatgtctctttctcaatacttatttatgccggttaatttgccatcttctggttatag |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
42823008 |
gctctttgatccaatccaattatgtggtcacaataataacatgaaggtctctatcaaaatacgtatttatgccggttaatttgccatcttatggttatag |
42822909 |
T |
|
| Q |
129 |
ttggaatctcaatctgaacctctcccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacttttgg |
228 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42822908 |
ttggaatctcaatctgaacctttaccatcagattaattggtgtccttatatatcaagtcattcatgatcttactttggttaagagttcctaaacgtttgg |
42822809 |
T |
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| Q |
229 |
gaaataaagtaaagagcatttggttc |
254 |
Q |
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|||||| | ||||||||||||||||| |
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|
| T |
42822808 |
gaaatacactaaagagcatttggttc |
42822783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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