View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_39 (Length: 262)
Name: NF1246_high_39
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12598451 - 12598683
Alignment:
| Q |
1 |
tcatcatcatggatagtagcgatagaacaactaaacctacaaccattaatacaacgtgcacctactggcttgctgggagatgcaacagaaacccttgtag |
100 |
Q |
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| T |
12598451 |
tcatcgtcatggatagtagcggtagaacaactaaacctacaaccattaatacaacatgcacctactggcttgctgggagatgcaacagaaacccttgtag |
12598550 |
T |
|
| Q |
101 |
gtttcttcacagtctaacaccaaccaatgctgctgccaacactggatattataatgctgcaaggaagcgccatttcgcttatggcccatccactgcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12598551 |
gtttcttcacagtctaacaccaaccaatgctgctgccaacactggatattataatgctgcaaggaagcgccatttcgcttatggcccatccactgcttct |
12598650 |
T |
|
| Q |
201 |
tctaatgcttacaccaacactgatgctgcaagg |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
12598651 |
tctaatgcttacaccaacactgatgctgcaagg |
12598683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 11045471 - 11045354
Alignment:
| Q |
66 |
tggcttgctgggagatgcaacagaaacccttgtaggtttcttcacagtctaacaccaaccaatgc---------tgctgccaacactggatattataatg |
156 |
Q |
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| T |
11045471 |
tggctcgctgggaaatgcaacagaaatccttgtaggtttcttcatagtgtagcaccatcgactgcttcctgcaatgctgccaacgctggatatcataatg |
11045372 |
T |
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| Q |
157 |
ctgcaaggaagcgccatt |
174 |
Q |
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| T |
11045371 |
ctgcaaggaagcggcatt |
11045354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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