View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_high_40 (Length: 256)
Name: NF1246_high_40
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 163
Target Start/End: Original strand, 34946688 - 34946850
Alignment:
| Q |
1 |
ggcatcatgctaactgttgtatgatatataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactcaagttatt |
100 |
Q |
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| T |
34946688 |
ggcatcatgctaactgttgtatgatatataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactcaagttatt |
34946787 |
T |
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| Q |
101 |
ggttcctgttaaacctgaaacaacctgtggaaggtccaggacaatgtacttcagctctggaaa |
163 |
Q |
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| T |
34946788 |
ggttcctgttaaacctgaaacaacctgtggaaggtccaggacaatgtacttcagctctggaaa |
34946850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 34951184 - 34951321
Alignment:
| Q |
26 |
atataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactcaagttattggttcctgttaaacctgaaacaacc |
125 |
Q |
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| T |
34951184 |
atataccttgagcaaaacggtatcagcttgagggatagatttaaacatgttcccaccaacaaaactcaagttaatgctccctgttaaacccgaaacaacc |
34951283 |
T |
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| Q |
126 |
tgtggaaggtccaggacaatgtacttcagctctggaaa |
163 |
Q |
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| T |
34951284 |
tgtggaaggtccaagacagtgtacttcagctctggaaa |
34951321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 8074617 - 8074682
Alignment:
| Q |
28 |
ataccttgagcgaaacagcatcagcttgagggatggatttaaacatgttcccaccaacaaaactca |
93 |
Q |
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| T |
8074617 |
ataccttgagtaaaattgcatcagcttgagggatagattcaaacatgtttccgcctacaaaactca |
8074682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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