View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_high_46 (Length: 251)
Name: NF1246_high_46
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_high_46 |
 | |
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| [»] scaffold0177 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
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| [»] scaffold0453 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14225181 - 14225427
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
14225181 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgatacgcttaagtgcaatggcg |
14225280 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14225281 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgcagtctctgccgtcaaattccattacgacatg |
14225380 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14225381 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
14225427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 18486389 - 18486143
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
18486389 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgatacgcttaagtgcaatggcg |
18486290 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
18486289 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgcagtctctgccgtcaaattccattacgacatg |
18486190 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18486189 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
18486143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 198
Target Start/End: Complemental strand, 26226636 - 26226501
Alignment:
| Q |
63 |
gttcgctgatacgcttaagtgcaatggcgtcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtag |
162 |
Q |
| |
|
||||||||||| ||||||| || |||| ||| |||||||| |||| || ||||||||||||| ||||||| || |||||||| ||||| ||| |||| |
|
|
| T |
26226636 |
gttcgctgatatgcttaagagcgatggtgtcaatcccgaagacatttgcttgcgtttattcccattctcccaaagggacagagctagagcgtggttgtaa |
26226537 |
T |
|
| Q |
163 |
tctctgccgtcaaattccattacgacatggaatgaa |
198 |
Q |
| |
|
|| || |||| ||||| | |||||||||||||||| |
|
|
| T |
26226536 |
tccctatcgtctaattctactacgacatggaatgaa |
26226501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0177 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0177
Description:
Target: scaffold0177; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 33900 - 34146
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
33900 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgatacgcttaagtgcaatggcg |
33999 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
34000 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggttgcagtctctgccgtcaaattccattacgacatg |
34099 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34100 |
gaatgatttgaaaaaggcgttcctagcaagatatttccctcctagta |
34146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 20932670 - 20932424
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| | |||||||||||||||| |
|
|
| T |
20932670 |
atcgtgcaacaaaaccaattttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgattcacttaagtgcaatggcg |
20932571 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20932570 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgcagtctctgccgtcaaattccattacgacatg |
20932471 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20932470 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
20932424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 15934357 - 15934599
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15934357 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgatacgcttaagtgcaatggcg |
15934456 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15934457 |
tcaatcccgaagccattcgcctgcgtttattccctttctccctcagagacaaagccagagcttggctgcagtctctgccgtcaaattccattacgacatg |
15934556 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcct |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15934557 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcct |
15934599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 87002 - 86750
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
87002 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaatttgctgatacgcttaagtgcaatggcg |
86903 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagac------agagccagagcttggctgtagtctctgccgtcaaattccattac |
185 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
86902 |
tcgatcccgaagccattcgcctgcgtttattccctttctccctcagagactgagacagagccagagcttggctgcagcctctgccgtcaaattccattac |
86803 |
T |
|
| Q |
186 |
gacatggaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
86802 |
gacatggaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
86750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 96134 - 95888
Alignment:
| Q |
1 |
atcgtgcaacaaaaccagttttccggtaattctacggaagatccgaatttgcacctatccgtgttcg---------ctgatacgcttaagtgcaatggcg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| | |
|
|
| T |
96134 |
atcgtgcaacaaaaccagttttccggtaattctacggaagacccgaatttgcacctatccgtgttcgtgcaattcgctgatacgcttaagtgcaatggtg |
96035 |
T |
|
| Q |
92 |
tcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatg |
191 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
96034 |
tttatcctgaagccattcgcctttgtttattccctttctccctcagagacagagccatagcttggctgcagtctctgccgtcaaattccattacgacatg |
95935 |
T |
|
| Q |
192 |
gaatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95934 |
caatgaattgaaaaaggcgttcctagcaagatatttccctcctagta |
95888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0453 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0453
Description:
Target: scaffold0453; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 238
Target Start/End: Original strand, 13342 - 13482
Alignment:
| Q |
98 |
ccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatggaatga |
197 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13342 |
ccgaagccattcgcatgtgtttattccctttctccctcagagacagagccagagcttggatgcagtctctgccgtcaaattccattacgacatggaatga |
13441 |
T |
|
| Q |
198 |
attgaaaaaggcgttcctagcaagatatttccctcctagta |
238 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13442 |
attgaaaaaggcgttcctagcaagatatttccctcctagta |
13482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 100 - 230
Target Start/End: Complemental strand, 19811857 - 19811727
Alignment:
| Q |
100 |
gaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctgtagtctctgccgtcaaattccattacgacatggaatgaat |
199 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||||| ||||||||||| || ||||| | || ||||||||||||||||| || ||||||||||||| |
|
|
| T |
19811857 |
gaagccattcgtttacgtttattccctttctccctcagggacagagccagcgcatggcttaattccctgccgtcaaattccataacaacatggaatgaat |
19811758 |
T |
|
| Q |
200 |
tgaaaaaggcgttcctagcaagatatttccc |
230 |
Q |
| |
|
| |||||||||||||| || || |||||||| |
|
|
| T |
19811757 |
taaaaaaggcgttcctcgctaggtatttccc |
19811727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 146
Target Start/End: Original strand, 24753460 - 24753506
Alignment:
| Q |
100 |
gaagccattcgcctgcgtttattccctttctccctcagagacagagc |
146 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| || |||||||| |
|
|
| T |
24753460 |
gaagccattctcctgcgtttattcccattctcccttagggacagagc |
24753506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 29318728 - 29318632
Alignment:
| Q |
63 |
gttcgctgatacgcttaagtgcaatggcgtcgctcccgaagccattcgcctgcgtttattccctttctccctcagagacagagccagagcttggctg |
159 |
Q |
| |
|
||||||||||| ||||||| || |||| ||| || |||| ||||| || ||||||||| ||| |||||||| || |||||| | ||||| |||||| |
|
|
| T |
29318728 |
gttcgctgatatgcttaagagcgatggtgtcaatctcgaatccatttgcttgcgtttatccccattctcccttagggacagacctagagcatggctg |
29318632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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