View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_1 (Length: 822)

Name: NF1246_low_1
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_1
NF1246_low_1
[»] chr4 (1 HSPs)
chr4 (114-789)||(46456542-46457219)


Alignment Details
Target: chr4 (Bit Score: 610; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 610; E-Value: 0
Query Start/End: Original strand, 114 - 789
Target Start/End: Complemental strand, 46457219 - 46456542
Alignment:
Q  114 atcagttaagatgttctttttattaaatgannnnnnnnnnnnactcttatcatattaatgaaatttttattacacattgcagcttggtcattctcttcgg 213  Q
    ||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46457219 atcagttaagatgttctttttattaaatgattttttttttttactcttatcatattaatgaaatttttattacacattgcagcttggtcattctcttcgg 46457120  T
Q  214 acatttacagggaatacagctgtgctgtcactagactttcatccaagtaaacatggccttatttgttcttgtgataataaggagataagattttggaata 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46457119 acatttacagggaatacagctgtgctgtcactagactttcatccaagtaaacatggccttatttgttcttgtgataataaggagataagattttggaata 46457020  T
Q  314 ttgcaaatggtagttgtattgggattttcaaggtaagtaatctcaaacagatattatgaagcagatcccaacgtacaattatagattgattgaaattaat 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46457019 ttgcaaatggtagttgtattgggattttcaaggtaagtaatctcaaacagatattatgaagcagatcccaacgtacaattatagattgattgaaattaat 46456920  T
Q  414 ttaaattctccaatactttatcagggtggtgtaactcaggtgagatttcaacctggtttgggaaaggttcttgcagcagcagtaaataatctaatactca 513  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46456919 ttaaattctccaatactttatcagggtggtgtaactcaggtgagatttcaacctggtttgggaaaggttcttgcagcagcagtaaataatctaatactca 46456820  T
Q  514 tgtttgacacagaaactctgagttgcagatttaaattgcaggtcagctgtgaattgtgtttgcatttgcatttgtctgtttgtgattttattcaagtttc 613  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46456819 tgtttgacacagaaactctgagttgcagatttaaattgcaggtcagctgtgaattgtgtttgcatttgcatttgtctgtttgtgattttattcaagtttc 46456720  T
Q  614 atttgacctcaaatgat-atata-ttttcatcttggtaatgatagtctgactaataaaccctaaaataataggttaagatcagttaatttcttttactta 711  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||    
T  46456719 atttgacctcaaatgatgctatatttttcatcttggtaatgatagtctgactacgaatccctaaaataataggttaagatcagttaatttcttttactta 46456620  T
Q  712 gctttaatttgcacaaacagttaatacatttccaacatcaaagtgttatccatcaatgtcatctttctctatctctca 789  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46456619 gctttaatttgcacaaacagttaatacatttccaacatcaaagtgttatccatcaatgtcatctttctctatctctca 46456542  T

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