View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_10 (Length: 587)
Name: NF1246_low_10
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 21 - 559
Target Start/End: Complemental strand, 42068482 - 42067940
Alignment:
| Q |
21 |
agatgacccatatacaaaatgtattaagattttacgttaaaatattatgtttaaatcatttatatggttgcccttgattcaacgtggaacccgagctcc- |
119 |
Q |
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|||||||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42068482 |
agatgacccatatacaaaatatcttaagattttacgttaaaatattatgtttaactcatttatatgattgcccttgattcaacgtggaacccgagctcct |
42068383 |
T |
|
| Q |
120 |
--cttcatgagcaaacaaaaatacaacccacttgaggggtgatagaagatagagag--tagtattgattctgagtatagtttgccaattgaccaatcaac |
215 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068382 |
cccttcatgatcaaacaaaaatacaacccacttgaggggtgatagaagatagagagggtagtattgattctgagtatagtttgccaattgaccaatcaac |
42068283 |
T |
|
| Q |
216 |
aacactatttacttcacgataaacatatgcttcacatagacctctcaaccacgatccaatcaatacttccatgtttgaaacatcctcaactaaggtatta |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068282 |
aacactatttacttcacgataaacat--gcttcacatagacctctcaaccacgatccaatcaatacttccatgtttgaaacatcctcaactaaggtatta |
42068185 |
T |
|
| Q |
316 |
gatttgcagtgattttgagagaagtaaaaagaaagcccaattttatgcttaaaaaataattttattttgtaccgatgattatgaagaaaaattccatgat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42068184 |
gatttgcagtgattttgagagaagtaaaaagaaagcccaattttatgcttaaaaaataattttattttgtaccgatgattatgaagaaaaattccatgat |
42068085 |
T |
|
| Q |
416 |
aaaccgcacctctgtggagtatgcaataatccatcaacaacaaaaatctaacacgtaacttcactaactaatttaaatgatgcaaaattataagtgtgtt |
515 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42068084 |
aaaccgcacctctgtgcagtatgcaataatccatcaacaacaaaaatctaacacgtaacttcactaactaatttaaatgatgcaaaattataagtgtatt |
42067985 |
T |
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| Q |
516 |
acaagtacaacacacaaccatatatt-ataaaaggaaattagaaa |
559 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42067984 |
acaagtacaacacacaaccatatattaataaaaggaaattagaaa |
42067940 |
T |
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