View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_101 (Length: 274)
Name: NF1246_low_101
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_101 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 22198419 - 22198268
Alignment:
| Q |
1 |
gcggaaataacgatctcttcttgatcgtgagtttgatggacagatggattgaggtggtaagagggagaacgagtgaacggtgaggtgaaaaaacgagatc |
100 |
Q |
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| T |
22198419 |
gcggcaataacgatctcttcttcatcgtgagtttgatggagagatggattgaggtggtgagagggagaacgagtgaacggtgaggtgaaaaaacgagatc |
22198320 |
T |
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| Q |
101 |
aatagagaaaaatatgtgatgggtttaccatttatgagtacgttctgtggtg |
152 |
Q |
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| T |
22198319 |
aatagagaaaaatatgtgatgggtttacgatttatgagaaggttctgtggtg |
22198268 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 6814319 - 6814227
Alignment:
| Q |
60 |
agagggagaacgagtgaacggtgaggtgaaaaaacgagatcaatagagaaaaatatgtgatgggtttaccatttatgagtacgttctgtggtg |
152 |
Q |
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| T |
6814319 |
agagtgagaaagagggaaaggtgaggtgaaaaaacgatttcaattgagaagaatatgtgatgggtatgcgatttatgagaaggttttgtggtg |
6814227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 6814359 - 6814319
Alignment:
| Q |
8 |
taacgatctcttcttgatcgtgagtttgatggacagatgga |
48 |
Q |
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| T |
6814359 |
taacgatctcttcttcattgtgagtttgatggagagatgga |
6814319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 133
Target Start/End: Complemental strand, 6098146 - 6098033
Alignment:
| Q |
25 |
tcgtgagtttgatggacagatggattgaggtggtaag------agggagaacgagtgaacggtgaggtgaaaaaacgagatcaatagagaaaaatatgtg |
118 |
Q |
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| T |
6098146 |
tcgtgagtttgatggaaagatggattaagatggtgagtgaggaagtgagaacgagtgaaaagtgaggtga-aaaacgagttcaattgagaagaatttgtg |
6098048 |
T |
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| Q |
119 |
atgggtttaccattt |
133 |
Q |
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| T |
6098047 |
atgggtatacgattt |
6098033 |
T |
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