View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_105 (Length: 266)
Name: NF1246_low_105
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_105 |
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Alignment Details
Target: chr1 (Bit Score: 87; Significance: 9e-42; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 12540214 - 12540348
Alignment:
| Q |
29 |
ataattaaagccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttata |
128 |
Q |
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| T |
12540214 |
ataattgaagacggtcatcgtcctactacttccacattgaatgatatttttcgaggtttatgtctcagaggccagatttataaagcaattatgttttata |
12540313 |
T |
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| Q |
129 |
agtacaccatactaaagggttttcagttgaacctt |
163 |
Q |
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| T |
12540314 |
attacaccatactaaagggttttcagttgaacctt |
12540348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 161
Target Start/End: Complemental strand, 12533331 - 12533211
Alignment:
| Q |
41 |
ggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccatac |
140 |
Q |
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|||| ||||||| || ||||||| |||||||||||||||| ||| ||||||| | ||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12533331 |
ggtcgtcgtcctactacttccacattgaatgatctttttcgaggtttatgtctcagaggccagatttataaagcaattatgttttataattacaccatac |
12533232 |
T |
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| Q |
141 |
taaagggttttcagttgaacc |
161 |
Q |
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| T |
12533231 |
taaagggttttcagttgaacc |
12533211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 157
Target Start/End: Complemental strand, 12535852 - 12535719
Alignment:
| Q |
24 |
acaatataattaaagccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgtt |
123 |
Q |
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| T |
12535852 |
acaatatcattaaagccggtcatcgtcctactgcttccactttgaattatcttttacaaggtttatgtgatagaggccagatttctaaagcaattatgtt |
12535753 |
T |
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| Q |
124 |
ttataagtacaccatactaaagggttttcagttg |
157 |
Q |
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| T |
12535752 |
ttttaattactccatcttaaagggttttgagttg |
12535719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 676928 - 677046
Alignment:
| Q |
39 |
ccggtcatcgtcctgctgcttccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccat |
138 |
Q |
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|||||||||||||| || |||||||||||||| ||||||| |||| |||||||| | ||| ||| ||| ||| |||| ||||||| | |||| ||| |
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| T |
676928 |
ccggtcatcgtcctactacttccactttgaatcatcttttaaaaggtttatgtcaaataggagagagttacaaaccaatggtgttttaccattacatcat |
677027 |
T |
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| Q |
139 |
actaaagggttttcagttg |
157 |
Q |
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||| |||||||||| |||| |
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| T |
677028 |
actcaagggttttcggttg |
677046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 671327 - 671224
Alignment:
| Q |
60 |
ccactttgaatgatctttttcaaggcttatgtcataaaggccagatttataaagcaattatgttttataagtacaccatactaaagggttttcagttgaa |
159 |
Q |
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||||||||||||||||||| |||| ||| |||| | ||| ||| ||||||||||| ||||||| | |||| |||||| ||||||||||||||| | |
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| T |
671327 |
ccactttgaatgatcttttaaaaggtttaagtcaaataggagagagttataaagcaacgttgttttaccattacatcatactcaagggttttcagttgga |
671228 |
T |
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| Q |
160 |
cctt |
163 |
Q |
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|||| |
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| T |
671227 |
cctt |
671224 |
T |
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