View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_113 (Length: 262)

Name: NF1246_low_113
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_113
NF1246_low_113
[»] chr6 (7 HSPs)
chr6 (94-262)||(27874153-27874320)
chr6 (94-262)||(26976294-26976461)
chr6 (94-262)||(1234688-1234855)
chr6 (94-228)||(27878872-27879008)
chr6 (94-219)||(30966683-30966806)
chr6 (94-206)||(30986552-30986662)
chr6 (166-222)||(18967912-18967968)
[»] chr5 (5 HSPs)
chr5 (94-262)||(34352235-34352402)
chr5 (94-262)||(34359943-34360110)
chr5 (94-262)||(29585463-29585631)
chr5 (94-262)||(41718397-41718564)
chr5 (94-262)||(41723123-41723290)
[»] chr4 (10 HSPs)
chr4 (94-262)||(42265890-42266057)
chr4 (94-262)||(42270609-42270776)
chr4 (94-262)||(24520188-24520355)
chr4 (94-262)||(48697295-48697462)
chr4 (94-262)||(48701984-48702151)
chr4 (94-228)||(30945639-30945775)
chr4 (94-228)||(30950345-30950481)
chr4 (97-222)||(10427315-10427430)
chr4 (98-183)||(1979253-1979334)
chr4 (94-139)||(48782850-48782893)
[»] chr3 (6 HSPs)
chr3 (94-262)||(5818676-5818843)
chr3 (94-262)||(5823438-5823605)
chr3 (94-228)||(54545902-54546038)
chr3 (96-262)||(2817427-2817581)
chr3 (97-222)||(24671186-24671301)
chr3 (97-222)||(4579126-4579241)
[»] chr8 (2 HSPs)
chr8 (94-262)||(9439535-9439702)
chr8 (94-262)||(9444255-9444422)
[»] chr2 (8 HSPs)
chr2 (94-262)||(5198818-5198985)
chr2 (94-220)||(15602905-15603031)
chr2 (144-228)||(830205-830291)
chr2 (144-228)||(825549-825635)
chr2 (97-198)||(28715816-28715913)
chr2 (94-153)||(8004167-8004225)
chr2 (94-153)||(13840397-13840456)
chr2 (166-222)||(30397135-30397191)
[»] chr7 (2 HSPs)
chr7 (110-228)||(30235038-30235159)
chr7 (94-222)||(16183795-16183913)
[»] scaffold0074 (1 HSPs)
scaffold0074 (166-222)||(27452-27508)
[»] chr1 (1 HSPs)
chr1 (166-222)||(46191266-46191322)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 9e-79; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 27874153 - 27874320
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27874153 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagcta 27874252  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27874253 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 27874320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 26976294 - 26976461
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26976294 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 26976393  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26976394 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 26976461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 1234855 - 1234688
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1234855 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 1234756  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1234755 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 1234688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 27878872 - 27879008
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  27878872 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 27878971  T
Q  192 taatttttctctctatattttttctctcactactcta 228  Q
    |||||||||||||||||||||| ||||| ||| ||||    
T  27878972 taatttttctctctatatttttcctctctctattcta 27879008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 94 - 219
Target Start/End: Complemental strand, 30966806 - 30966683
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcac-aggagaaact 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |  | | |||||||||||||||| || |||||||    
T  30966806 acctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgaggctacctaggagaaacctcacaagtagaaact 30966711  T
Q  193 aatt-tttctctctatattttttctctc 219  Q
    | || |||||||||||||||||||||||    
T  30966710 atttctttctctctatattttttctctc 30966683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 206
Target Start/End: Complemental strand, 30986662 - 30986552
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctca-caggagaaact 192  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||    ||| |||| | |||||||||||||||  ||||||||||    
T  30986662 acctctctctaaatgcaaggagagtacaattaccactctctcttgtaaatagaagaat----actgacactacctaggagaaacctcatgaggagaaact 30986567  T
Q  193 aatt-tttctctcta 206  Q
    | || ||||||||||    
T  30986566 atttctttctctcta 30986552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 18967968 - 18967912
Alignment:
Q  166 actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 222  Q
    |||||||||||||||||| |||||||||  ||| |||| ||||||||| ||||||||    
T  18967968 actaggagaaacctcacaagagaaactatatttcctctttatatttttcctctcact 18967912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 34352402 - 34352235
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  34352402 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaacta 34352303  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34352302 atttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 34352235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 34360110 - 34359943
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  34360110 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaatctcacaggagaaacta 34360011  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34360010 atttttctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 34359943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 29585463 - 29585631
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  29585463 acctctctctaactacaaagagagtacaattaccactctctcttataaataggagaatactaactaatacaaactaggagaaacctcacaggagaaacta 29585562  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||    
T  29585563 atttttctctctatatttttcctctcactactctagacaagctttacttgttgttgtgttgttactgat 29585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 41718564 - 41718397
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41718564 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 41718465  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41718464 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 41718397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 41723290 - 41723123
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41723290 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 41723191  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  41723190 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 41723123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 9e-79; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 42266057 - 42265890
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42266057 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagcta 42265958  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42265957 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 42265890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 94 - 262
Target Start/End: Complemental strand, 42270776 - 42270609
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  42270776 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaagcta 42270677  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42270676 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 42270609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 24520188 - 24520355
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24520188 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 24520287  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24520288 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 24520355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 48697295 - 48697462
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48697295 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 48697394  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48697395 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 48697462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 48701984 - 48702151
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48701984 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 48702083  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48702084 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 48702151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 30945639 - 30945775
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  30945639 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 30945738  T
Q  192 taatttttctctctatattttttctctcactactcta 228  Q
    |||||||||||||||||||||| ||||| ||| ||||    
T  30945739 taatttttctctctatatttttcctctctctattcta 30945775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 30950345 - 30950481
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 191  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  30950345 acctctctctaaatacaaggaaagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 30950444  T
Q  192 taatttttctctctatattttttctctcactactcta 228  Q
    |||||||||||||||||||||| ||||| ||| ||||    
T  30950445 taatttttctctctatatttttcctctctctattcta 30950481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 10427430 - 10427315
Alignment:
Q  97 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 196  Q
    |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  |    
T  10427430 tctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcacaggagaaactatat 10427341  T
Q  197 tttctctctatattttttctctcact 222  Q
    || |||||||||||||| ||||||||    
T  10427340 ttcctctctatatttttcctctcact 10427315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 183
Target Start/End: Complemental strand, 1979334 - 1979253
Alignment:
Q  98 ctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcaca 183  Q
    |||||||||| ||||||| ||| | |||||||||||||||||||| ||||||||    |||| ||| ||| |||||||||||||||    
T  1979334 ctctctaaatgcaaggagggtatatttaccactctctcttataaacaggagaat----actagcactaaccaggagaaacctcaca 1979253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 48782893 - 48782850
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttat 139  Q
    ||||||||||||||||| ||||  ||||||||||||||||||||||    
T  48782893 acctctctctaaatacatggag--tacaattaccactctctcttat 48782850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 5818676 - 5818843
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5818676 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 5818775  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5818776 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 5818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 5823438 - 5823605
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5823438 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 5823537  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5823538 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 5823605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 54546038 - 54545902
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctcacaggagaaac 191  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||    
T  54546038 acctctctctaactacaaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacctaggagaaacctcacaggagaaac 54545939  T
Q  192 taatttttctctctatattttttctctcactactcta 228  Q
    |||||||||||||||||||||| ||||||||| ||||    
T  54545938 taatttttctctctatatttttcctctcactattcta 54545902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 96 - 262
Target Start/End: Original strand, 2817427 - 2817581
Alignment:
Q  96 ctctctctaaatacaaggagagtacaattaccactct--ctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||| |||||| |||||||              |||||||||||    
T  2817427 ctctctctaaatacaaggagagtacaatcaccactctctctcttataaataggagaatactaactaatacaaact--------------aggagaaacta 2817512  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| ||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  2817513 tttttcctctctatattttttctctcattaccctaaacaagttttacttgttcttgtgttgttactgat 2817581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 222
Target Start/End: Original strand, 24671186 - 24671301
Alignment:
Q  97 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 196  Q
    |||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||  |    
T  24671186 tctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcacaggagaaactatat 24671275  T
Q  197 tttctctctatattttttctctcact 222  Q
    || |||||||||||||| ||||||||    
T  24671276 ttcctctctatatttttcctctcact 24671301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 222
Target Start/End: Complemental strand, 4579241 - 4579126
Alignment:
Q  97 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 196  Q
    |||||||||||||||||||||   ||||||| ||||||| |  |||||||||||||| ||||        ||| |||||||||||||||||||||||  |    
T  4579241 tctctctaaatacaaggagagacaaattacc-ctctctcgtg-aaataggagaatactaact--------ctatgagaaacctcacaggagaaactatat 4579152  T
Q  197 tttctctctatattttttctctcact 222  Q
    || |||||||||||||| ||||||||    
T  4579151 ttcctctctatatttttcctctcact 4579126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 9439535 - 9439702
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9439535 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 9439634  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9439635 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 9439702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 9444255 - 9444422
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9444255 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 9444354  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9444355 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 9444422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 94 - 262
Target Start/End: Original strand, 5198818 - 5198985
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5198818 acctctctctaactacaaggagagtacaaataccactctctcttataaataggagaatactaactaacacaaactaggagaaacctcacaggagaaacta 5198917  T
Q  194 atttttctctctatattttttctctcactactctaaacaagctttacttgttcttgtgttgttactgat 262  Q
     |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5198918 tttttcctctctatattttttctctcacta-tctaaacaagctttacttgttcttgtgttgttactgat 5198985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 15603031 - 15602905
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    |||||||||||||| || |||| |||||||||||| ||| |||| ||||||||||||||| |||||||||  |||| ||||||||||| || | || |||    
T  15603031 acctctctctaaatgcatggagtgtacaattaccattctatcttgtaaataggagaatactaactaacacttactaagagaaacctcatagaaaaatcta 15602932  T
Q  194 atttttctctctatattttttctctca 220  Q
    |||||||| ||||||||||| ||||||    
T  15602931 atttttctttctatatttttcctctca 15602905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 830291 - 830205
Alignment:
Q  144 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 228  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  830291 aggagaatacaaacactaacactacctaggagaaacctcacaggagaaactaatttttctctctatatttttcctctcactattcta 830205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 825635 - 825549
Alignment:
Q  144 aggagaatacaaac--taacacaaactaggagaaacctcacaggagaaactaatttttctctctatattttttctctcactactcta 228  Q
    ||||||||||||||  |||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||    
T  825635 aggagaatacaaacactaacactacctaggagaaacctcgcaggagaaactaatttttctctctatatttttcctctcactattcta 825549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 28715913 - 28715816
Alignment:
Q  97 tctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaactaatt 196  Q
    ||||||||||| |||||||||||||||||||||  | || |||||||||||||||    |||||||| | ||||||||||||| ||| ||||||||| ||    
T  28715913 tctctctaaatgcaaggagagtacaattaccaccgtttcctataaataggagaat----actaacactacctaggagaaaccttacaagagaaactattt 28715818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 8004225 - 8004167
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 153  Q
    |||||||| |||||  ||| ||||||||||||| ||||||||||||||||||||||||||    
T  8004225 acctctctttaaatgtaagaagagtacaattac-actctctcttataaataggagaatac 8004167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 153
Target Start/End: Original strand, 13840397 - 13840456
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatac 153  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||| |||||  |||||||    
T  13840397 acctctctctaaatataaggagagtacaattacaattctctcttaaaaataaaagaatac 13840456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 30397135 - 30397191
Alignment:
Q  166 actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 222  Q
    ||||||||||| ||||||||||||||||  ||| ||||||||||| || ||||||||    
T  30397135 actaggagaaatctcacaggagaaactatatttcctctctatattgttcctctcact 30397191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 30235159 - 30235038
Alignment:
Q  110 aaggagagtacaattaccactctctcttataaataggagaatacaa--actaacacaaactaggagaaacctca-caggagaaactaatttttctctcta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||| |  || |||||||||||  ||||||||||||||||||||||||    
T  30235159 aaggagagtacaattaccactctctcttataaataggagaatacaaacactaacactacgtaagagaaacctcataaggagaaactaatttttctctcta 30235060  T
Q  207 tattttttctctcactactcta 228  Q
    ||||||| ||||||||||||||    
T  30235059 tatttttcctctcactactcta 30235038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 16183795 - 16183913
Alignment:
Q  94 acctctctctaaatacaaggagagtacaattaccactctctcttataaataggagaatacaaactaacacaaactaggagaaacctcacaggagaaacta 193  Q
    ||||||||||||||||||||||||   ||||||| |||||||||  |||||||||||||| |||        ||||||||||||||||||||||||||||    
T  16183795 acctctctctaaatacaaggagagacaaattacc-ctctctcttg-aaataggagaatactaac--------actaggagaaacctcacaggagaaacta 16183884  T
Q  194 atttttctctctatattttttctctcact 222  Q
      ||| |||||||||||||| ||||||||    
T  16183885 tatttcctctctatatttttcctctcact 16183913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Original strand, 27452 - 27508
Alignment:
Q  166 actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 222  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  27452 actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 27508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 46191322 - 46191266
Alignment:
Q  166 actaggagaaacctcacaggagaaactaatttttctctctatattttttctctcact 222  Q
    ||||||||||||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46191322 actaggagaaacctcacaggagaaactatatttcctctctatatttttcctctcact 46191266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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