View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_117 (Length: 251)
Name: NF1246_low_117
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_117 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 28471785 - 28471681
Alignment:
| Q |
1 |
gtatgttacagggacctggtttattattatttttagcctataaacaaagtgtcaaatatcatttgaaactcacataacatagtttagtagctactttttt |
100 |
Q |
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| T |
28471785 |
gtatgttacagggacctggtttattattatttttagcctataaacaaagagtcaaatatcatttgaaactcacataacatagtttagtagctactttttt |
28471686 |
T |
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| Q |
101 |
aagtt |
105 |
Q |
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||||| |
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| T |
28471685 |
aagtt |
28471681 |
T |
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Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 28471621 - 28471545
Alignment:
| Q |
165 |
cactcctaattttaaagatttcttgcacaaatatttaacacttcaactgcttgtcattccaactttttaaagaataat |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28471621 |
cactcctaattttaaagatttcttgcacaaatatt-aacacttcaactgcttgtcattccaactttttaaagaataat |
28471545 |
T |
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