View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_119 (Length: 251)

Name: NF1246_low_119
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_119
NF1246_low_119
[»] chr2 (7 HSPs)
chr2 (1-244)||(15654449-15654692)
chr2 (1-244)||(15645397-15645640)
chr2 (1-244)||(15624772-15625015)
chr2 (14-244)||(15493657-15493887)
chr2 (1-240)||(15534000-15534239)
chr2 (1-214)||(15601210-15601423)
chr2 (14-240)||(15517487-15517713)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15654692 - 15654449
Alignment:
Q  1 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||||||||||||    
T  15654692 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaactgccgagtcttgcatg 15654593  T
Q  101 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15654592 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 15654493  T
Q  201 cattcttggtgttttcaatatcagatgcatctgcattcatctca 244  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  15654492 cattcttggtgtttgcaatatcagatgcatctgcattcatctca 15654449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15645640 - 15645397
Alignment:
Q  1 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       | |||||||||||||||    
T  15645640 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcgtggatgaaaaaaacggccgagtcttgcatg 15645541  T
Q  101 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15645540 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 15645441  T
Q  201 cattcttggtgttttcaatatcagatgcatctgcattcatctca 244  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  15645440 cattcttggtgtttgcaatatcagatgcatctgcattcatctca 15645397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 15625015 - 15624772
Alignment:
Q  1 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatg 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||       |||||||||||||||||    
T  15625015 ctctgaaggctttacagcacaagagctattctcaattgagcatgaaacactaagagaaaacgcagagtcgtggatgaaaaaaactgccgagtcttgcatg 15624916  T
Q  101 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15624915 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgattctggaaaaccacactatttgaataaaacat 15624816  T
Q  201 cattcttggtgttttcaatatcagatgcatctgcattcatctca 244  Q
    |||||||||||||| ||||||||||||||| |||||||||||||    
T  15624815 cattcttggtgtttgcaatatcagatgcatttgcattcatctca 15624772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 244
Target Start/End: Complemental strand, 15493887 - 15493657
Alignment:
Q  14 actgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactg 113  Q
    |||||| |||| || ||||| | ||||||||||| |||||| ||| |||||||||| ||||||       ||||||||||||| |||||||||||||| |    
T  15493887 actgcagaagaactgttctcgaatgagcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgccgagtcttgtatgctaatttcaacag 15493788  T
Q  114 tcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtt 213  Q
    |||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| | ||||||||| |||| ||||| ||| ||||||||||||||||    
T  15493787 tcattgctactggagtgttcgctgctgcaactactttaccaggtggtaccgatgacacaggaaaaccaaactacttgaagaaaccatcattcttggtgtt 15493688  T
Q  214 ttcaatatcagatgcatctgcattcatctca 244  Q
    | ||||||||||  ||| |||||| ||||||    
T  15493687 tgcaatatcagacacatttgcatttatctca 15493657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 15534239 - 15534000
Alignment:
Q  1 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatg 100  Q
    ||||||| |||| |||||||||||| ||||||||| |||||||| || |||||| ||  |||||||||| ||||||       |||| ||||| || |||    
T  15534239 ctctgaacgcttgactgcacaagagttattctcaaatgagcatgcaaaactaagggaggatgcagagtcttggatgaaaaaaactgcggagtcatgtatg 15534140  T
Q  101 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 200  Q
    ||||||||||| |||||||||||||||||||| |||||||||  |||||||||||| |||||||||||| | ||||||||| |||| ||||  ||||||     
T  15534139 ctaatttcaacagtcattgctaccggagtgttcgctgctgcagttactttaccaggtggtaccgatgacaccggaaaaccaaactagttgacgaaaacac 15534040  T
Q  201 cattcttggtgttttcaatatcagatgcatctgcattcat 240  Q
    |||||||||| ||| ||| |||||||||||||||||||||    
T  15534039 cattcttggtatttgcaacatcagatgcatctgcattcat 15534000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 15601423 - 15601210
Alignment:
Q  1 ctctgaaggctttactgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatg 100  Q
    |||||||||| |||||||||||||  | |||||||  |||||| ||| ||||||||||||||||||||||||||||       | || |||||||| |||    
T  15601423 ctctgaaggccttactgcacaagaagtcttctcaaaagagcatcaaaaactaagagaaaatgcagagtcatggatgaagaaaaccgcagagtcttgtatg 15601324  T
Q  101 ctaatttcaactgtcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacat 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | ||||||||| | |||||||| ||| |||    
T  15601323 ctaatttcagccgtcattgctaccggagtgtttgctgctgcaactactgtaccaggcggtatcgatgacacaggaaaaccaaattatttgaagaaaccat 15601224  T
Q  201 cattcttggtgttt 214  Q
    |||| |||||||||    
T  15601223 catttttggtgttt 15601210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 15517713 - 15517487
Alignment:
Q  14 actgcacaagagctattctcaattgagcatgaaacactaagagaaaatgcagagtcatggatgnnnnnnnctgccgagtcttgcatgctaatttcaactg 113  Q
    |||||| |||| || ||||||| ||||||||||| |||||| ||| |||||||||| ||||||       |||| ||||| || |||||||||||||| |    
T  15517713 actgcagaagaactgttctcaaatgagcatgaaaaactaagggaagatgcagagtcttggatgaaaaaaactgcggagtcgtgtatgctaatttcaacag 15517614  T
Q  114 tcattgctaccggagtgtttgctgctgcaactactttaccaggcggtaccgatgactctggaaaaccacactatttgaataaaacatcattcttggtgtt 213  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||| |||| || | ||||||||| ||| |||||| ||| ||||||| |||| |||    
T  15517613 tcattgctaccggagtgttcgctgctgcagttactttaccaggtggtatcgataacacaggaaaaccaaactttttgaagaaaccatcatttttggggtt 15517514  T
Q  214 ttcaatatcagatgcatctgcattcat 240  Q
    | ||||||||||||||||||| |||||    
T  15517513 tgcaatatcagatgcatctgcgttcat 15517487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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