View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_12 (Length: 566)
Name: NF1246_low_12
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 490; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 4163955 - 4163421
Alignment:
| Q |
8 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4163955 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
4163856 |
T |
|
| Q |
108 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163855 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
4163756 |
T |
|
| Q |
208 |
aattctggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163755 |
aattctagatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
4163656 |
T |
|
| Q |
308 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4163655 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataa |
4163556 |
T |
|
| Q |
408 |
gagaattc--tgatga---tgtccatggaatggaacggtttttctcggatcaccgagaatgtcaaccgagtatttagccggttggcgttttgatcaagac |
502 |
Q |
| |
|
|||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4163555 |
gagaattcattggagaactggtccatggaatggaacggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagac |
4163456 |
T |
|
| Q |
503 |
aaagatggaactacttatctaacttatgatttcgc |
537 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
4163455 |
aaagatggaactacttatctaacttatgatttcgc |
4163421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 4124246 - 4123718
Alignment:
| Q |
8 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4124246 |
ccaacaatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaacc |
4124147 |
T |
|
| Q |
108 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
207 |
Q |
| |
|
||||||| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || ||| |
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|
| T |
4124146 |
aaatggtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatc |
4124053 |
T |
|
| Q |
208 |
aattctggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
307 |
Q |
| |
|
| ||||||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| |||| |
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|
| T |
4124052 |
agttctggagcaacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatat |
4123953 |
T |
|
| Q |
308 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataa |
407 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
4123952 |
cctttgtatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggtatgataa |
4123853 |
T |
|
| Q |
408 |
gagaattc--tgatga---tgtccatggaatggaacggtttttctcggatcaccgagaatgtcaaccgagtatttagccggttggcgttttgatcaagac |
502 |
Q |
| |
|
|| ||||| || || |||||||||||||| ||||||||||||| ||||||| |||| |||| |||||||| |||||||| ||||| ||||||| |
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|
| T |
4123852 |
gaaaattcattggagaactggtccatggaatggattggtttttctcggaacaccgagtatgttaaccaagtatttacacggttggcattttgttcaagac |
4123753 |
T |
|
| Q |
503 |
aaagatggaactacttatctaacttatgatttcgc |
537 |
Q |
| |
|
|| ||||||||||||||| | ||||| ||||||| |
|
|
| T |
4123752 |
aatgatggaactacttatattacttacaatttcgc |
4123718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 8 - 541
Target Start/End: Complemental strand, 4153596 - 4153064
Alignment:
| Q |
8 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||| || |||||||||||||| |
|
|
| T |
4153596 |
ccaacaatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaacc |
4153497 |
T |
|
| Q |
108 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
207 |
Q |
| |
|
||||||| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || ||| |
|
|
| T |
4153496 |
aaatggtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatc |
4153403 |
T |
|
| Q |
208 |
aattctggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
307 |
Q |
| |
|
| ||| ||| ||||||| |||||||||||||| |||||||| ||||| ||||||||||| |||||||||||| |||| ||| ||| || ||||| |||| |
|
|
| T |
4153402 |
agttccggagcaacaatctgggatagtttcacacaccctgcagatgcagctgttccaacaatgagaattgcagctaaccaagtaacaggtaagaaaatat |
4153303 |
T |
|
| Q |
308 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataa |
407 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||| | ||||| |
|
|
| T |
4153302 |
cctttgtatcaagaaaaagtgataatgatccttcttcaggacattattcagctagtcttgaaagattggatgcaccagaagttttcatttggaaagataa |
4153203 |
T |
|
| Q |
408 |
gagaattc-----tgatgatgtccatggaatggaacggtttttctcggatcaccgagaatgtcaaccgagtatttagccggttggcgttttgatcaagac |
502 |
Q |
| |
|
| |||| || | ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4153202 |
aaatattcattggagaacaggtccatggaatggaagggtttttctcggatcaccgagaatgttaaccgagtatttagccggttggcgttttgatcaagac |
4153103 |
T |
|
| Q |
503 |
aaagatggaactacttatctaacttatgatttcgctgat |
541 |
Q |
| |
|
| ||||||||||||||| | ||||| |||| |||||| |
|
|
| T |
4153102 |
actgatggaactacttatattacttacaattttgctgat |
4153064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 4134791 - 4134263
Alignment:
| Q |
8 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4134791 |
ccaacaacatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaacc |
4134692 |
T |
|
| Q |
108 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
207 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| |||||| |
|
|
| T |
4134691 |
aaatggtatcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatc |
4134598 |
T |
|
| Q |
208 |
aattctggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
307 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||||| ||| | ||||||||| |||||| ||||||||||||||||| || || ||| | || |
|
|
| T |
4134597 |
aattctggagcaacaatctgggatagtttcacacaccctgcagattcagctgttccatcgatgaaaattgcatctaataaagttacaggtaagcaaattg |
4134498 |
T |
|
| Q |
308 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttggtatgataa |
407 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||||||| || | ||| ||||||||||||||| |||||||||||| |||||| | ||||| |
|
|
| T |
4134497 |
cttttgtagcaagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttggaaagataa |
4134398 |
T |
|
| Q |
408 |
gagaatt--ctgatga---tgtccatggaatggaacggtttttctcggatcaccgagaatgtcaaccgagtatttagccggttggcgttttgatcaagac |
502 |
Q |
| |
|
| |||| || || ||||||||||||||| ||||||||||||| | || ||| |||||||||| ||| || ||||||||||| | | ||| |
|
|
| T |
4134397 |
aaaaatttattggagaactggtccatggaatggaagggtttttctcggaacgccaagattgtcaaccgaatatctatttggttggcgtttaggtgtcgac |
4134298 |
T |
|
| Q |
503 |
aaagatggaactacttatctaacttatgatttcgc |
537 |
Q |
| |
|
| |||||||| |||| | |||||||| ||||||| |
|
|
| T |
4134297 |
gatgatggaaccacttttataacttataatttcgc |
4134263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 8 - 399
Target Start/End: Complemental strand, 4145593 - 4145208
Alignment:
| Q |
8 |
ccaacaatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaga |
107 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4145593 |
ccaacaacatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaacc |
4145494 |
T |
|
| Q |
108 |
aaatggtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatc |
207 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||| || ||||| |||||| |||||| |||||| ||||| ||| |||||||||||||| |||||| |
|
|
| T |
4145493 |
aaatggcagcatcatttggtcaacaaacatttca--tc----ttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatc |
4145400 |
T |
|
| Q |
208 |
aattctggatcaacaatttgggatagtttcactcaccctgcggatgccgctgttccaacgatgagaattgcatctaataaagcaacggggaagaatatat |
307 |
Q |
| |
|
||||||||| ||||||| |||||||||||||| |||||| | ||| | ||||||||| |||||| |||||||||||| |||| || || ||| | || |
|
|
| T |
4145399 |
aattctggagcaacaatctgggatagtttcacacacccttcagattcagctgttccatcgatgaaaattgcatctaacaaagttacaggtaagcaaattg |
4145300 |
T |
|
| Q |
308 |
cttttgtatcaagaaaaagtgaaaatgatccttcttcaggacattatataggaagtcttgaaagattggatgcaccagaagtttttatttgg |
399 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||| ||||||| || | ||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
4145299 |
cttttgtagcaagaaaaagtgacaatgatccttcttcgggacattttacaattagtgttgaaagattggatgtaccagaagttttcatttgg |
4145208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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