View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_120 (Length: 251)

Name: NF1246_low_120
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_120
NF1246_low_120
[»] chr1 (7 HSPs)
chr1 (13-251)||(24416019-24416257)
chr1 (13-218)||(24310490-24310695)
chr1 (13-188)||(24367472-24367644)
chr1 (71-249)||(24340654-24340832)
chr1 (71-249)||(24353019-24353197)
chr1 (13-196)||(24323062-24323249)
chr1 (71-133)||(24369800-24369862)
[»] chr5 (6 HSPs)
chr5 (71-251)||(42561973-42562150)
chr5 (73-138)||(9120117-9120182)
chr5 (88-138)||(179412-179462)
chr5 (71-133)||(29688488-29688550)
chr5 (153-187)||(29712166-29712200)
chr5 (74-126)||(29696602-29696654)
[»] chr4 (30 HSPs)
chr4 (71-138)||(7878737-7878804)
chr4 (71-131)||(7790441-7790501)
chr4 (71-131)||(7908663-7908723)
chr4 (74-135)||(48156072-48156133)
chr4 (73-125)||(50666682-50666734)
chr4 (71-126)||(7771761-7771816)
chr4 (71-138)||(7773465-7773532)
chr4 (76-135)||(48147358-48147417)
chr4 (74-187)||(48863573-48863683)
chr4 (71-132)||(48864395-48864456)
chr4 (71-132)||(49038518-49038579)
chr4 (73-138)||(49043810-49043875)
chr4 (71-131)||(7813838-7813898)
chr4 (71-138)||(45371714-45371781)
chr4 (71-138)||(48853035-48853102)
chr4 (74-187)||(49040795-49040905)
chr4 (74-126)||(7237386-7237438)
chr4 (71-131)||(7786825-7786885)
chr4 (71-131)||(7800998-7801058)
chr4 (71-133)||(45384532-45384594)
chr4 (81-131)||(48903316-48903366)
chr4 (73-122)||(37826632-37826681)
chr4 (82-131)||(47208238-47208287)
chr4 (71-131)||(7766003-7766063)
chr4 (73-138)||(49048197-49048262)
chr4 (86-138)||(45365875-45365927)
chr4 (78-118)||(48735058-48735098)
chr4 (71-123)||(48870929-48870981)
chr4 (71-123)||(48876233-48876285)
chr4 (71-123)||(48886615-48886667)
[»] chr3 (4 HSPs)
chr3 (74-131)||(11024146-11024203)
chr3 (74-133)||(11015134-11015193)
chr3 (74-131)||(11005571-11005628)
chr3 (101-138)||(47451570-47451607)
[»] chr7 (2 HSPs)
chr7 (71-138)||(48884178-48884245)
chr7 (85-126)||(30130916-30130957)
[»] chr6 (2 HSPs)
chr6 (76-138)||(21016175-21016237)
chr6 (85-125)||(14197337-14197377)
[»] chr8 (5 HSPs)
chr8 (71-131)||(15349244-15349304)
chr8 (74-133)||(12195683-12195742)
chr8 (74-133)||(12440111-12440170)
chr8 (83-133)||(4031578-4031628)
chr8 (98-136)||(4962186-4962224)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 24416257 - 24416019
Alignment:
Q  13 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24416257 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgccctttgtattct 24416158  T
Q  113 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24416157 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 24416058  T
Q  213 tatcatttgggagaggaatctctagaagtttcctttccg 251  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  24416057 tatcacttgggagaggaatctctagaagtttcctttccg 24416019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 218
Target Start/End: Complemental strand, 24310695 - 24310490
Alignment:
Q  13 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 112  Q
    |||||||||||||||||||||||| |   ||||||||  || |||||||| ||  |  | ||||||||||||| ||||||| ||||||||||||||||||    
T  24310695 aatatcaccactttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttgtattct 24310596  T
Q  113 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaactataatctgtagaccaaaattcaa 212  Q
    ||||||||||||||||||||| ||||||    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || | | ||||||    
T  24310595 ttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaa 24310496  T
Q  213 tatcat 218  Q
    ||||||    
T  24310495 tatcat 24310490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 188
Target Start/End: Complemental strand, 24367644 - 24367472
Alignment:
Q  13 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 112  Q
    |||||||||| ||||||||||||| || ||| ||||||||||||||||||||||  | ||||||||||||||||||||||| || |||||||||||||||    
T  24367644 aatatcaccagtttttgtacaacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattct 24367545  T
Q  113 ttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctctaaatacccataaac 188  Q
    | ||| |||||||||| || | ||||  |   ||||||||||||||||||||||||||||||||||||||||||||    
T  24367544 tccattacccatatataaagtgtatctct---cctcaaaacccatagactgagaaatcctctaaatacccataaac 24367472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 24340832 - 24340654
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24340832 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24340733  T
Q  171 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 249  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24340732 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24340654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 249
Target Start/End: Complemental strand, 24353197 - 24353019
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 170  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||  |||||| |  |  || |||||||||||| |||||||    
T  24353197 agaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatc 24353098  T
Q  171 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttc 249  Q
    ||||| |||||||||||| | || | ||| | | |   |||| ||||| ||||||||||||||||| ||||||||||||    
T  24353097 ctctacatacccataaaccacaaaccgtataaccatggtcaaaatcatctgggagaggaatctctacaagtttcctttc 24353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 24323249 - 24323062
Alignment:
Q  13 aatatcaccactttttgtacaacaaatgggggaaatgcgaggaatggtatccatgttgagaacaagagttttagtccaagatgactgcactttgtattct 112  Q
    |||||||||||||||||||||||| |   |||||| || | ||||||||  ||  |  |||||||||||||||||| |||||||||||||||||||||||    
T  24323249 aatatcaccactttttgtacaacatacaagggaaacgccatgaatggtaagcaaatcaagaacaagagttttagtcgaagatgactgcactttgtattct 24323150  T
Q  113 ttcatca----cccatatatcaactctatccttaaacct-caaaacccatagactgagaaatcctctaaatacccataaactataatct 196  Q
    |||||||    |||||||||||||| || ||  |  ||| |||||||||||||||| |||||||||||||||||||||||| |||||||    
T  24323149 ttcatcacccacccatatatcaacttta-cccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatct 24323062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 24369862 - 24369800
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    |||||||||||||||||||||||||| ||||||   || | || |||||||||||||||||||    
T  24369862 agaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaact 24369800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 71 - 251
Target Start/End: Original strand, 42561973 - 42562150
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatc 170  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||  |||| |    |||||||| |||||||||||||||||    
T  42561973 agaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacattatcgt---ccctcaaaatccatagactgagaaatc 42562069  T
Q  171 ctctaaatacccataaactataatctgtagaccaaaattcaatatcatttgggagaggaatctctagaagtttcctttccg 251  Q
    ||||||||||||| |||| | || || | ||   | | | ||||||| |||| ||| ||||||||||||||||||||||||    
T  42562070 ctctaaatacccaaaaaccacaacctttggaattataattaatatcaattggaagaagaatctctagaagtttcctttccg 42562150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 9120182 - 9120117
Alignment:
Q  73 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||||||  ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  88 ccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 29688550 - 29688488
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    ||||| ||||| || |||||||| || ||||| ||||||| ||||||||||||||| ||||||    
T  29688550 agaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaact 29688488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 187
Target Start/End: Original strand, 29712166 - 29712200
Alignment:
Q  153 cccatagactgagaaatcctctaaatacccataaa 187  Q
    |||||||||||||| ||||||||||||||||||||    
T  29712166 cccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 126
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 126  Q
    |||||||| ||||||||||| || ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 7878804 - 7878737
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  7878804 agaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7790501 - 7790441
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||    
T  7790501 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7908723 - 7908663
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||    
T  7908723 agaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 74 - 135
Target Start/End: Original strand, 48156072 - 48156133
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 135  Q
    |||||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactct 48156133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 125
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  73 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccata 125  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 126
Target Start/End: Complemental strand, 7771816 - 7771761
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 126  Q
    |||||||||||||||||||| || || |||||||||||||||||||||||||||||    
T  7771816 agaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 7773465 - 7773532
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    |||||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7773465 agaacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 48147358 - 48147417
Alignment:
Q  76 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactct 135  Q
    |||||| ||||||||||| || ||||||||||||||||||||||||||||| ||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactct 48147417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 74 - 187
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 173  Q
    |||||||||||| |||||||||| ||||||  |||||||| |||||||||||| |||||  ||   | |  || | ||||||||||||||||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaacctta---tgatcccccgaaacccatagactgagagatcctc 48863587  T
Q  174 taaatacccataaa 187  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 48864456 - 48864395
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 132  Q
    ||||||||| | ||||||||||| || ||||||||||||||||||||||||||||| |||||    
T  48864456 agaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaac 132  Q
    ||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 49043810 - 49043875
Alignment:
Q  73 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||| |||||||| || || ||||||||||||||||||||||||||||| |||||| ||||    
T  49043810 aacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatc 49043875  T

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Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7813898 - 7813838
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  7813898 agaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 138
Target Start/End: Original strand, 45371714 - 45371781
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||| ||| ||||||||||| || |||||||||||||||||||| |||||||| |||||| ||||    
T  45371714 agaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

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Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 48853102 - 48853035
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||||| ||||||||||| ||  ||||||||||||||||||| |||||||| |||||| ||||    
T  48853102 agaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatc 48853035  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 49040795 - 49040905
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcctc 173  Q
    |||||| ||||| |||||||||| ||||||   ||||||| ||||||||||||||||||  |||  |    || | |||||||||||||||||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---ccccgaaacccatagactgagaaatcctt 49040891  T
Q  174 taaatacccataaa 187  Q
    ||||||||||||||    
T  49040892 taaatacccataaa 49040905  T

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Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 126
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatat 126  Q
    |||||||||||||||||| | || |||| ||||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

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Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7786885 - 7786825
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||| ||| |||||||| | ||||| ||||||||||||||||||||||| ||||    
T  7786885 agaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

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Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7801058 - 7800998
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  7801058 agaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 45384532 - 45384594
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    |||||| |||| || |||||||| || |||||||| |||||||||||||||||||| ||||||    
T  45384532 agaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

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Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  81 ttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    |||||||||||||  | ||||||||||||||||||||||||||||| ||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  73 aacaagagttttagtccaagatgactgcactttgtattctttcatcaccc 122  Q
    ||||||||| ||||||||||| || |||| ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

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Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 47208287 - 47208238
Alignment:
Q  82 tttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||||||||| || |||||||||||||||||||||| ||| ||||    
T  47208287 tttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

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Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 7766063 - 7766003
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    |||||||| || |||||||| || || | ||||||||||||||||||||||||||| ||||    
T  7766063 agaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaa 7766003  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 49048197 - 49048262
Alignment:
Q  73 aacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||| ||| |||||||| || || |||||||| || ||||||||||||||||| |||||| ||||    
T  49048197 aacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatc 49048262  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 45365875 - 45365927
Alignment:
Q  86 gtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    |||||||| ||  ||||||| |||||||||||||||||||| |||||| ||||    
T  45365875 gtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatc 45365927  T

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Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 118
Target Start/End: Original strand, 48735058 - 48735098
Alignment:
Q  78 gagttttagtccaagatgactgcactttgtattctttcatc 118  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  48735058 gagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 48870981 - 48870929
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 123  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48870981 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48870929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 48876285 - 48876233
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 123  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48876285 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48876233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Complemental strand, 48886667 - 48886615
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcaccca 123  Q
    ||||||||||| || |||||||| || | |||||||||||| |||||||||||    
T  48886667 agaacaagagtctttgtccaagacgagttcactttgtattcattcatcaccca 48886615  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    |||||||| ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    |||||||  ||||||||||| || |||||||||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 47451570 - 47451607
Alignment:
Q  101 actttgtattctttcatcacccatatatcaactctatc 138  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatc 47451607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 48884245 - 48884178
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    ||||||||||| |||||||||||    |||||||||||||||||||||||| |||| |||||| ||||    
T  48884245 agaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 30130916 - 30130957
Alignment:
Q  85 agtccaagatgactgcactttgtattctttcatcacccatat 126  Q
    |||||||||||| |||||| ||||||||| ||||||||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatat 30130957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 21016237 - 21016175
Alignment:
Q  76 aagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaactctatc 138  Q
    |||||| ||||||||||| || || ||||||||||||||||| |||||||| |||||| ||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc 21016175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  85 agtccaagatgactgcactttgtattctttcatcacccata 125  Q
    |||||||||||| |||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 131
Target Start/End: Complemental strand, 15349304 - 15349244
Alignment:
Q  71 agaacaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaa 131  Q
    ||||||||| | || |||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349304 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 12195742 - 12195683
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12195683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 12440170 - 12440111
Alignment:
Q  74 acaagagttttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    |||||||| |||||||||||||| ||   |||||||||||||||| ||||||| ||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaact 12440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 4031578 - 4031628
Alignment:
Q  83 ttagtccaagatgactgcactttgtattctttcatcacccatatatcaact 133  Q
    ||||||||||| || |||| ||||||||||||||| |||||||| ||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Original strand, 4962186 - 4962224
Alignment:
Q  98 tgcactttgtattctttcatcacccatatatcaactcta 136  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  4962186 tgcagtttgtattctttcatcacccatatttcaactcta 4962224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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