View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_121 (Length: 251)
Name: NF1246_low_121
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_121 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 37979539 - 37979780
Alignment:
| Q |
1 |
taacctcatttatcatgggaacaaattcactggcaggttgaaaaagtacttcctctgctttgttattctacaaaccataatcaatgttaattcattttta |
100 |
Q |
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| T |
37979539 |
taacctcatttatcatgggaacaaattctctggcaggttgaaaaagtacttcctcagctttgttattctacaaaccataatcaatgttaattcattttta |
37979638 |
T |
|
| Q |
101 |
gaatttaaaaaatttaagaccttattccacggcactatataggtcaaattnnnnnnntacactagagctattttactcactttgttgtatttggactctt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37979639 |
gaatttaaaaaattgaagaccttattccacggcactatataggtcaaattaaaaaaatacactagagctattttactcactttgttgtatttggactctt |
37979738 |
T |
|
| Q |
201 |
ttgttggtcctttaatatccatgccatgacttccagtataat |
242 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
37979739 |
ttgttggccctttaatatccatgccatgacttccagcataat |
37979780 |
T |
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