View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_122 (Length: 251)
Name: NF1246_low_122
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_122 |
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Alignment Details
Target: chr7 (Bit Score: 124; Significance: 7e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 37529825 - 37529956
Alignment:
| Q |
1 |
cgatttgcaaatggacctatttactctgcgaaaacattttttgatttcattttaatttgttaataagaagatgaaataattttgaagtgaggggtggata |
100 |
Q |
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| T |
37529825 |
cgatttgcaaatggacctatttactctgcgaaaacattttttgatttcattttaatttgttaataagaagatgaaataattttgaagtgaggggtgcata |
37529924 |
T |
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| Q |
101 |
ttatgcagaggttttgctttgtaataactttt |
132 |
Q |
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| T |
37529925 |
ctatgcagaggttttgctttgtaataactttt |
37529956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 37530019 - 37530066
Alignment:
| Q |
195 |
gcttctgacataaagctcagcaaaaacaacataatcacatagaattat |
242 |
Q |
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| T |
37530019 |
gcttctgacataaagctcagcaaaaacaacataatcacatcgaattat |
37530066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 17234074 - 17234037
Alignment:
| Q |
16 |
cctatttactctgcgaaaacattttttgatttcatttt |
53 |
Q |
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| T |
17234074 |
cctatttactgtgcgaaaacattttttgttttcatttt |
17234037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Original strand, 47364643 - 47364675
Alignment:
| Q |
46 |
ttcattttaatttgttaataagaagatgaaata |
78 |
Q |
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| T |
47364643 |
ttcattttaaattgttaataagaagatgaaata |
47364675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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