View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_126 (Length: 250)
Name: NF1246_low_126
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_126 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 27399556 - 27399793
Alignment:
| Q |
30 |
gtaacatgttttaatttccaagctcagaacagaaagtgatcctgtaaggataataaatccagtaactcaaataagagagataaaa--------------- |
114 |
Q |
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| T |
27399556 |
gtaacatgttttaatttccaagctcagaacagaaagtgatcctgtaaggataataaatccagtaactcaaataagagagataaaaacaaaggtaaaaaaa |
27399655 |
T |
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| Q |
115 |
--acaaaaggataattgtaatgtgaggttcttaagtttgtaggacattaaaaatttgtaatatataacaatgtatatgaaaccagataatttgtacgtcg |
212 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27399656 |
aaacaaaaggatagttgtaatgtgaggttcttaagtttgtaggacattaaaaatttgtaatatataagaatgtatatgaaaccagataatttgtacgtcg |
27399755 |
T |
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| Q |
213 |
cattccttgaatagactcttcatgttctgtgaataaga |
250 |
Q |
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| T |
27399756 |
cattccttgaatagactcttcatgttctgtgaataaga |
27399793 |
T |
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