View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_13 (Length: 547)
Name: NF1246_low_13
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_13 |
 |  |
|
Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 1538345 - 1537899
Alignment:
| Q |
5 |
cagcaccacagatgcattagaaaaatggaaaattaaaagtcatatattgggaaatcatcaaatttttatttaacacgctgtaaaattaacaagagacctc |
104 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1538345 |
cagcaccaaacatgcattagaaaaatggaaaattaaaagtcatacattgggaaatcatcaaatttttatttaacacgctgtaaaattaacaagagacctc |
1538246 |
T |
 |
| Q |
105 |
cactttcataaaacagaaaaccctcttgcatataggaaaacacgtaaatagactcttgtaaccacttatcaattagaagtaattttgaaaatcattacat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1538245 |
cactttcataaaacagaaaaccctcttgcatataggaaaacacgtaaatagatgcttgtaaccacttatcaattagaagtaattttgaaaaccattacat |
1538146 |
T |
 |
| Q |
205 |
ttatgatttcaaaatacaatctagcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataacc |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1538145 |
ttatgatttcaaaatacaatctagcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataacc |
1538046 |
T |
 |
| Q |
305 |
atatggagatgttaactttcttaacggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctctt |
404 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || |||||||| ||| |||||||| |||||||||| |
|
|
| T |
1538045 |
atatggagatgttaactttcttaacgatggccttgaaaatatcaatgaggtaagaacatcatcatccacttgaacacaccttttcaaattgatctctctt |
1537946 |
T |
 |
| Q |
405 |
agttgtgtgca-ctttctaccacatgcttcactcccatctctgtgac |
450 |
Q |
| |
|
||||| ||||| |||||| ||||| |||||||||| ||| |||||| |
|
|
| T |
1537945 |
agttgagtgcatttttctagcacatacttcactcccttctgtgtgac |
1537899 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 234 - 450
Target Start/End: Complemental strand, 12121806 - 12121589
Alignment:
| Q |
234 |
ttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacggtg |
333 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||| || ||| | |||||||||||| || ||||| ||| |||||||| || | || |
|
|
| T |
12121806 |
ttagaatactagcaaacaatgcaaccttgacgtgataagagttccatctccttgttgttgaaacgataacgatctggagttgtaaactttctcaatgatg |
12121707 |
T |
 |
| Q |
334 |
gccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgctt |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12121706 |
gccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcatttttctaccacatgctt |
12121607 |
T |
 |
| Q |
433 |
cactcccatctctgtgac |
450 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
12121606 |
cactcccatctctgtgac |
12121589 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 229 - 450
Target Start/End: Complemental strand, 1513758 - 1513536
Alignment:
| Q |
229 |
cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa |
328 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||| ||||||||||||||| | |||||||||||| |
|
|
| T |
1513758 |
cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaaatgataaccatatggaggttataactttcttaa |
1513659 |
T |
 |
| Q |
329 |
cggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca |
427 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || ||||| | |||||||||||||| ||||||||| ||||||||||| |||||| |||| |
|
|
| T |
1513658 |
cgatggccttgaaaatatcaatgaggcaagaacatcaccattcactttagaacaatatttcaaattgatctctctcagttgtgtgcatttttctagcaca |
1513559 |
T |
 |
| Q |
428 |
tgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
1513558 |
agcttcactcccatctctgtgac |
1513536 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 229 - 450
Target Start/End: Complemental strand, 1489715 - 1489493
Alignment:
| Q |
229 |
cactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaa |
328 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| |||||||||| ||||| |||||||||||||| ||||| ||||||||| || |||||||||||| |
|
|
| T |
1489715 |
cacttttagaatactagcaaacaatgcatccttgaagtgataagagctccatctctctgtcgctgaattgataatcatatggagttgataactttcttaa |
1489616 |
T |
 |
| Q |
329 |
cggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccaca |
427 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||||||| ||| |||||| |||| |
|
|
| T |
1489615 |
cgatggccttgaaaatatcaatgaggcaagaacatcatcatgcacttgaccacacattttcaaattgatctctcttagttgtgcgcatttttctagcaca |
1489516 |
T |
 |
| Q |
428 |
tgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
1489515 |
tgcttcactcccttctctgtgac |
1489493 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 227 - 452
Target Start/End: Complemental strand, 1508359 - 1508133
Alignment:
| Q |
227 |
agcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttctt |
326 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
1508359 |
agcacttttagaatactagcaaacaatgcatccttgacgtgataagtgttccatctctctatcgctgaaacgataaccaagaggaattgttatttttctc |
1508260 |
T |
 |
| Q |
327 |
aacggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctacca |
425 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| | | || | | ||| ||||||||||| ||||||||||||||||||||| |||||| | |
|
|
| T |
1508259 |
aacgatggccttgaaaatatcaatgaggcaagaacatcaccacgtaccttaggaccatatttcaaattgatctctcttagttgtgtgcatttttctagcg |
1508160 |
T |
 |
| Q |
426 |
catgcttcactcccatctctgtgactg |
452 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
1508159 |
catgcttcactcccatctcggtgactg |
1508133 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 255 - 450
Target Start/End: Complemental strand, 1534319 - 1534123
Alignment:
| Q |
255 |
catccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacggtggccttgaaaatatcaatgagg |
354 |
Q |
| |
|
|||||||| || ||||||||||||| || |||||||||||||||||| || ||||| ||||| ||| | || | ||||||||| ||||||||||||| |
|
|
| T |
1534319 |
catccttggcgcaataagagttccatctccttgtcgctgaaacgataacgatctggagttgttacatttttcaatgatggccttgacaatatcaatgagg |
1534220 |
T |
 |
| Q |
355 |
caagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||||||||||| | ||| | | ||||||| |||||||||||||| |||||||| || || |||||||||||||| |||||| |||||||||| |
|
|
| T |
1534219 |
caagaacatcacttttcacattacaacaatatatcaaatcgatctcttgtagttgtgcacagttctctaccacatgcttaactcccttctctgtgac |
1534123 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 372
Target Start/End: Original strand, 558242 - 558386
Alignment:
| Q |
228 |
gcactcttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttctta |
327 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||| ||| ||||||| ||||| |||||||||||||||||| || |||||||| |||||||||||| | |
|
|
| T |
558242 |
gcacttttagattactagcagccaatgcatcctttacgcaataagagctccatctctctgtcgctgaaacgacaaggatatggagttgttaactttctca |
558341 |
T |
 |
| Q |
328 |
acggtggccttgaaaatatcaatgaggcaagaacatcacaatgca |
372 |
Q |
| |
|
| | ||| ||||||| ||| |||||| ||||| ||| || ||||| |
|
|
| T |
558342 |
atgatggtcttgaaagtattaatgagacaagatcatgaccatgca |
558386 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 234 - 366
Target Start/End: Complemental strand, 1517848 - 1517716
Alignment:
| Q |
234 |
ttagaaaactagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacggtg |
333 |
Q |
| |
|
|||||| ||||| ||||| | |||||||| || |||| |||||||| || ||||||||||||||||| || ||||| ||||| ||| | || | || |
|
|
| T |
1517848 |
ttagaatactagtaaacattacatccttggcgcaataaaagttccatctccttgtcgctgaaacgataatgatctggagttgttacatttttcaatgatg |
1517749 |
T |
 |
| Q |
334 |
gccttgaaaatatcaatgaggcaagaacatcac |
366 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| |
|
|
| T |
1517748 |
gccttgacaatatcaatgagacaagaacatcac |
1517716 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 450
Target Start/End: Complemental strand, 1553038 - 1552902
Alignment:
| Q |
315 |
gttaactttcttaacggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgc |
414 |
Q |
| |
|
|||| |||||| || | |||||||||||||| |||||| |||| ||||||| || ||||| ||||||| |||||||| ||||||||||||||| || |
|
|
| T |
1553038 |
gttatctttctcaatgatggccttgaaaataccaatgaagcaacaacatcatgatccactttaagacaacctttcaaattgatctctcttagttgcaagc |
1552939 |
T |
 |
| Q |
415 |
-actttctaccacatgcttcactcccatctctgtgac |
450 |
Q |
| |
|
| ||||| | ||||||||||||||| |||| ||||| |
|
|
| T |
1552938 |
aattttctccgacatgcttcactcccttctcggtgac |
1552902 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 1496261 - 1496136
Alignment:
| Q |
241 |
actagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacggtggccttga |
340 |
Q |
| |
|
||||| ||||| | |||||||| || ||||||||||||| || ||||| |||| |||||| || ||||| ||||| ||| | |||| ||||||||| |
|
|
| T |
1496261 |
actagtaaacattacatccttggcgcaataagagttccatctccttgtcgttgaatggataacgatgtggagttgttacatttttcaacgatggccttga |
1496162 |
T |
 |
| Q |
341 |
aaatatcaatgaggcaagaacatcac |
366 |
Q |
| |
|
|||||||||||| |||||||||||| |
|
|
| T |
1496161 |
caatatcaatgagacaagaacatcac |
1496136 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 450
Target Start/End: Complemental strand, 55505444 - 55505237
Alignment:
| Q |
244 |
agcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataaccatatggagatgttaactttcttaacggtggccttgaaaa |
343 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| | | | | ||| || ||| || ||||| ||| | ||||| |||||| || | |||||||||||| |
|
|
| T |
55505444 |
agcaaacaatgcatccttgacgcaagaagagtttcttcttttcgtcactcaaatgaaaaccaggtggcgctgttatctttctcaatgatggccttgaaaa |
55505345 |
T |
 |
| Q |
344 |
tatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcccatc |
442 |
Q |
| |
|
|| || |||| ||| |||| | |||||||| | |||| ||||| | ||||||||||||||||||||| |||||| ||| || ||||||||| || |
|
|
| T |
55505344 |
taccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagttttctaacacgtgtttcactcccttc |
55505245 |
T |
 |
| Q |
443 |
tctgtgac |
450 |
Q |
| |
|
|||||||| |
|
|
| T |
55505244 |
tctgtgac |
55505237 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 553384 - 553434
Alignment:
| Q |
389 |
caaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcc |
438 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||| |||||||| |
|
|
| T |
553384 |
caaatcgatctctctaagttgtgtgcagttttctaccacatgattcactcc |
553434 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 450
Target Start/End: Original strand, 546819 - 546880
Alignment:
| Q |
390 |
aaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| |||||| ||||||||| |||||||||| |
|
|
| T |
546819 |
aaattgatctctcttagttttgtgcagttttctagcacatgtttcactcccttctctgtgac |
546880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 438
Target Start/End: Original strand, 644734 - 644786
Alignment:
| Q |
387 |
ttcaaatcgatctctcttagttgtgtgca-ctttctaccacatgcttcactcc |
438 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |||||||| |||||||| |
|
|
| T |
644734 |
ttcaaatcgatctctctcagttgtgtgcatttttcaaccacatgtttcactcc |
644786 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 199 - 434
Target Start/End: Complemental strand, 44575886 - 44575643
Alignment:
| Q |
199 |
ttacatttatgatttcaaaatacaatctagcactcttagaaaactagcaaacaatgcatcc-------ttgacgtgataagagttccatttctctgtcgc |
291 |
Q |
| |
|
||||||||| || |||||| |||||| |||| | || ||| ||||||||||||||||||| |||||| |||||||||||||| ||| ||| | |
|
|
| T |
44575886 |
ttacatttaagagttcaaactacaatgaagcaattttcgaatactagcaaacaatgcatcccttgacgttgacgcgataagagttccatctcttggtcac |
44575787 |
T |
 |
| Q |
292 |
tgaaacgataaccatatggagatgttaactttcttaacggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaa |
391 |
Q |
| |
|
||||| || || ||||||| |||||||||||| || | ||||||||||| |||||| |||||||||||||||| |||||| | | ||||| | |||| |
|
|
| T |
44575786 |
tgaaatcatcacgatatggaattgttaactttctcaatgatggccttgaaagtatcaacgaggcaagaacatcacgatgcacattatcacaatttctcaa |
44575687 |
T |
 |
| Q |
392 |
atcgatctctcttagttgtgtgca-ctttctaccacatgcttca |
434 |
Q |
| |
|
|| || |||||| |||||||||| ||||||||||||| |||| |
|
|
| T |
44575686 |
attgagctctctcggttgtgtgcagttttctaccacatgattca |
44575643 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 327 - 450
Target Start/End: Complemental strand, 45245341 - 45245217
Alignment:
| Q |
327 |
aacggtggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt-ctacca |
425 |
Q |
| |
|
|||| |||||||||||||| || ||| ||| ||||| | ||||||||||| || | |||||| ||||||| | ||||||||||| ||| |||||| |
|
|
| T |
45245341 |
aacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctacca |
45245242 |
T |
 |
| Q |
426 |
catgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||| ||||||||| | |||||||| |
|
|
| T |
45245241 |
catgtttcactcccttatctgtgac |
45245217 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 332 - 450
Target Start/End: Complemental strand, 51114032 - 51113913
Alignment:
| Q |
332 |
tggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcacttt-ctaccacatgc |
430 |
Q |
| |
|
||||||||||||||||| |||||||| || || | |||||||| || |||| || |||| ||||||||||||| |||||| ||| ||||||||||| |
|
|
| T |
51114032 |
tggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctaccacatgc |
51113933 |
T |
 |
| Q |
431 |
ttcactcccatctctgtgac |
450 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
51113932 |
ttcactcccttctctgtgac |
51113913 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 449
Target Start/End: Complemental strand, 514979 - 514861
Alignment:
| Q |
332 |
tggccttgaaaatatcaatgaggcaagaacatcacaatgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgcactttct-accacatgc |
430 |
Q |
| |
|
|||||||||||||| || || ||||| ||||| | ||||||||| | |||| | | |||| ||||||||| ||| ||||||| ||| | ||||||||| |
|
|
| T |
514979 |
tggccttgaaaataccattggggcaacaacattataatgcactttattacaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgc |
514880 |
T |
 |
| Q |
431 |
ttcactcccatctctgtga |
449 |
Q |
| |
|
||||||||| ||||||||| |
|
|
| T |
514879 |
ttcactcccgtctctgtga |
514861 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 438
Target Start/End: Original strand, 28934933 - 28935004
Alignment:
| Q |
368 |
atgcacttgaagacaatatttcaaatcgatctctcttagttgtgtgc-actttctaccacatgcttcactcc |
438 |
Q |
| |
|
|||||||| || ||||| | ||||| |||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
28934933 |
atgcactttaacacaatcatccaaatagatctctcttagttgtgtgcaattttctaccacatgcttcactcc |
28935004 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 450
Target Start/End: Original strand, 6415880 - 6415933
Alignment:
| Q |
398 |
ctctcttagttgtgtgcactt-tctaccacatgcttcactcccatctctgtgac |
450 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| |||||||||| |||||||| |
|
|
| T |
6415880 |
ctctcttagttgtgtgcagttctctaccacatgtttcactcccacttctgtgac |
6415933 |
T |
 |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 242 - 303
Target Start/End: Complemental strand, 18315555 - 18315494
Alignment:
| Q |
242 |
ctagcaaacaatgcatccttgacgtgataagagttccatttctctgtcgctgaaacgataac |
303 |
Q |
| |
|
||||||||||| ||||| |||||| || ||||||||| |||||||||| ||||||| ||||| |
|
|
| T |
18315555 |
ctagcaaacaaggcatctttgacgcgagaagagttccctttctctgtcactgaaacaataac |
18315494 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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