View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_133 (Length: 231)
Name: NF1246_low_133
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_133 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 59 - 231
Target Start/End: Original strand, 13866518 - 13866690
Alignment:
| Q |
59 |
ataagtccttcataaaggaggggaagtggcctccttcacgattgttggttcatttctaccatcttcctaattttcacattttctcttattcaatcaattc |
158 |
Q |
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| T |
13866518 |
ataagtccttcataaaggaggtgaagtggcctccttcacgattgttggttcatttctaccatcttcctaattttcacattttctcttattcaatcaattc |
13866617 |
T |
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| Q |
159 |
attgtgttgtgtttagatattcactaacaaaagcctcaattgattttgaaataatttgttattcatttgtacc |
231 |
Q |
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| T |
13866618 |
attgtgttgtgtttagatattcactaacaaaagcctcaattgattttaaaataatttgttattcatttgtacc |
13866690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 13866051 - 13866105
Alignment:
| Q |
1 |
acaatgtcatcaagaaaaatttataagaatataaattcagaaacacaatccaaaa |
55 |
Q |
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| T |
13866051 |
acaatgtcatcaagaaaaatttataagaatataaattcagaaacacaatccaaaa |
13866105 |
T |
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