View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_135 (Length: 220)
Name: NF1246_low_135
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_135 |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 41430190 - 41430115
Alignment:
| Q |
1 |
gatcatgattgaaaagtgaaacccatgattaagattttaataaaaatcaaaaatttaaatagattgaagacacccc |
76 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41430190 |
gatcatgattgaaaagtgaaacccatgattaagattttaataaaaataaaaaatttaaatagattgaagacacccc |
41430115 |
T |
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Target: scaffold0274 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 14693 - 14767
Alignment:
| Q |
1 |
gatcatgattgaaaagtgaaacccatgattaagattttaataaaaatcaaaaatttaaatagattgaagacacccc |
76 |
Q |
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| T |
14693 |
gatcatgatt-aaaagtgaaacccatgattaagattttaataaaaataaaaaatttaaatagattgaagacacccc |
14767 |
T |
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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33368034 - 33367957
Alignment:
| Q |
1 |
gatcatgattgaaaagtgaaa--cccatgattaagattttaataaaaatcaaaaatttaaatagattgaagacacccc |
76 |
Q |
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| T |
33368034 |
gatcatgattgaaaagtgaaaaccccatgattaagattttaataaaaatcaaaactttgaatagattgaagacacccc |
33367957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 33360512 - 33360437
Alignment:
| Q |
1 |
gatcatgattgaaaagtgaaacccatgattaagattttaataaaaatcaaaaatttaaatagattgaagacacccc |
76 |
Q |
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||||||| ||||||||||||| || |||||| | ||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
33360512 |
gatcatggttgaaaagtgaaaacccagattaaaaatttaataaaaatcaaaactttgaatagattgaagacacccc |
33360437 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7764916 - 7764974
Alignment:
| Q |
1 |
gatcatgattgaaaagtgaaacccatgattaagattttaataaaaatcaaaaatttaaa |
59 |
Q |
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||||||| ||||||||||||| ||||| |||||||||| ||||||||||||| |||||| |
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| T |
7764916 |
gatcatggttgaaaagtgaaaaccatgtttaagatttttataaaaatcaaaactttaaa |
7764974 |
T |
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