View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_14 (Length: 537)
Name: NF1246_low_14
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 10323343 - 10323796
Alignment:
| Q |
1 |
tgtagtgtcacatcagacatttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcattgatagat |
100 |
Q |
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| T |
10323343 |
tgtagtgtcacatcagacatttgtggtggtattacaatttacaaatatattgtatttattgaaacaattgtgaatataaaggagctgatcattgatagat |
10323442 |
T |
|
| Q |
101 |
cagtacatgacaaagatacgcatgtatnnnnnnnnttagaataagaattcaactttgtttacattggtagtttgtcctttgttactttaattgaaaggtg |
200 |
Q |
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| T |
10323443 |
cagtacatgacaaagatacgcatgtataaaaaaa-ttagaataagaattcaactttgtttacattggtagtttgtcctttgttactttaattgaaaggtg |
10323541 |
T |
|
| Q |
201 |
ctccaaatatttaacattatcattaatttactaactcaaagaagatcctaagttgattttcgaaatattgtttgtatatgtagttcaaatggctgggtca |
300 |
Q |
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| T |
10323542 |
ctccaaatatttaacattatcattaatttactaactcaaagaagatcctaagttgattttcgaaatattgtttgtatatgtagttcaaatggcggggtca |
10323641 |
T |
|
| Q |
301 |
atgatgatatacatccacaaatggttaaggatttagttaaacttgaagtttcactttctatgggtgatcatgataatccccataaagcatcaagtataat |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
10323642 |
atgatgatatacatgcacaaatggttaaggatttagttaaacttgaagtttcactttctatgggtgatcattataatccccataaagcatcaagtataat |
10323741 |
T |
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| Q |
401 |
tgtttttaattttgcagtaagttctataactcaattatccttatatatcgatatt |
455 |
Q |
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|||||||||||||||||||| | |||||| |||||||| |||||||||||||||| |
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| T |
10323742 |
tgtttttaattttgcagtaaatcctataattcaattattcttatatatcgatatt |
10323796 |
T |
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