View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_15 (Length: 529)
Name: NF1246_low_15
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 72 - 525
Target Start/End: Complemental strand, 19282524 - 19282068
Alignment:
| Q |
72 |
atatccaccacccatctgaagctcatgttcttgttgctgctgctgcataactagtccacctcctccaaccatctcttgaggaaaattgttagggtaattc |
171 |
Q |
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| T |
19282524 |
atatccaccacccatctgaagctcatgttcttgttgctgctgc---ataactagtccacctcctccaaccatctcttgaggaaaattgttagggtaattc |
19282428 |
T |
|
| Q |
172 |
gcaaaagccgcaaactgcgaattccattgttgttgttgctgctg------ttgaggcattaaaactgttccagaattcatcaacaagcactgcatggttt |
265 |
Q |
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| T |
19282427 |
gcaaaagccgcaaactgcgaattccattgttgctgttgctgctgctgctgttgaggcattaaaactgttccagaattcatcaataagcactgcatggttt |
19282328 |
T |
|
| Q |
266 |
gaggattcaaattataaccggcgagttcttttttcgcaacggtgagttcattttgagtttctcttaacttctgttggagatatgagatgagacctacaca |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19282327 |
gaggattcaaattataaccggcgagttcttttttcgcaacggtgagttcattttgagtttctcttaacttctgttggagatatgagatgagacctacaca |
19282228 |
T |
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| Q |
366 |
tccatagacagggtcttttatacgagactctgcctcgtatgccaaagatttcaccgcgtcttcacggtccttcacgtcaagctcttttaagagcttagcg |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19282227 |
tccatagacagggtcttttatacgagactctgcctcgtatgccaaagatttcaccgcgtcttcacggtccttcacgtcaagctcttttaagagcttagcg |
19282128 |
T |
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| Q |
466 |
acgttgcttgcaccgaagacacggtgaacattcgcgaatcgctgtggatattcttggaga |
525 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| |
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| T |
19282127 |
acgttgcttgcaccgaagacacggtgaacattagcgaatcgctgtggattttctgggaga |
19282068 |
T |
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