View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_150 (Length: 206)
Name: NF1246_low_150
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_150 |
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Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 32724503 - 32724615
Alignment:
| Q |
1 |
gtttctaaattttaattttaatatctttctctttcaaaattcattcatgaataatattcataatataacatttactttcaccactacgttcattccttct |
100 |
Q |
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| T |
32724503 |
gtttctaaattttaattttaatatcgtt-tctttcaaaattctttcatgaataatattcatgatacaacatttactttcaccactacgttcattccttct |
32724601 |
T |
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| Q |
101 |
atctgttttttaaa |
114 |
Q |
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|||||||||||||| |
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| T |
32724602 |
atctgttttttaaa |
32724615 |
T |
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Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4001860 - 4001937
Alignment:
| Q |
1 |
gtttctaaattttaattttaatatctttctctttcaaaattcattcatgaataatattcataatataacatttacttt |
78 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4001860 |
gtttctaaattttaattttaatatctttctctttcaaaattcattcatgaataatattcataatacaacatttacttt |
4001937 |
T |
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