View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1246_low_152 (Length: 204)
Name: NF1246_low_152
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_152 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 9e-69; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14946512 - 14946659
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgataggtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
14946512 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataattagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgatatgtg |
14946611 |
T |
|
| Q |
101 |
acatgaacaccttgtactaggctatatatactgactagagaattaagt |
148 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
14946612 |
acatgaacaccttgtactagtctatttatactgactagagaattaagt |
14946659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14942486 - 14942633
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgataggtg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14942486 |
atctagtttcttacctgaaaccaccgcaaatgaaacacaaataattagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgataggtg |
14942585 |
T |
|
| Q |
101 |
acatgaacaccttgtactaggctatatatactgactagagaattaagt |
148 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
14942586 |
atatgaacaccttgtactaggctatttatagtgactagataattaagt |
14942633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 14952493 - 14952640
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgataggtg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14952493 |
atctagtttcttacctgaaaccaccgcaaatgaaacacaaataattagaaaggttaaaaggagagtattgatgcaagatgccattttgttttgataggtg |
14952592 |
T |
|
| Q |
101 |
acatgaacaccttgtactaggctatatatactgactagagaattaagt |
148 |
Q |
| |
|
| ||||||||||||||||||||||| |||| |||||||| |||||||| |
|
|
| T |
14952593 |
atatgaacaccttgtactaggctatttatagtgactagataattaagt |
14952640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3183279 - 3183186
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttga |
94 |
Q |
| |
|
||||||||||||||||| |||||| | | | || |||||||||| |||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
3183279 |
atctagtttcttacctgcaaccatgactgaagcaatgcaaataactataaaggttaaaaggatgggtttgatgcaagatgctattttgttttga |
3183186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3192841 - 3192748
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttga |
94 |
Q |
| |
|
||||||||||||||||| |||||| | | | || |||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3192841 |
atctagtttcttacctgcaaccattactgaagcaatgcaaataactataaatgttaaaaggatgggtttgatgcaagatgccattttgttttga |
3192748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3201659 - 3201566
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttga |
94 |
Q |
| |
|
||||||||||||||||| |||||| | | | || |||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3201659 |
atctagtttcttacctgcaaccattactgaagcaatgcaaataactataaatgttaaaaggatgggtttgatgcaagatgccattttgttttga |
3201566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3210496 - 3210403
Alignment:
| Q |
1 |
atctagtttcttacctgaaaccatcgcaaatgaaacacaaataactagaaaggttaaaaggagagtattgatgcaagatgccattttgttttga |
94 |
Q |
| |
|
||||||||||||||||| |||||| | | | || |||||||||| ||| |||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
3210496 |
atctagtttcttacctgcaaccattactgaagcaatgcaaataactataaatgttaaaaggatgggtttgatgcaagatgccattttgttttga |
3210403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University