View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_153 (Length: 203)
Name: NF1246_low_153
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_153 |
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Alignment Details
Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44555465 - 44555570
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44555465 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacagccaattttcttatcattca |
44555564 |
T |
|
| Q |
101 |
gatatt |
106 |
Q |
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|||||| |
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| T |
44555565 |
gatatt |
44555570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 44544823 - 44544928
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||| |||||||||| |
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| T |
44544823 |
tcaatcataaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccaatgcacgcttacaaacaatttttttatcattca |
44544922 |
T |
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| Q |
101 |
gatatt |
106 |
Q |
| |
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|||||| |
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| T |
44544923 |
gatatt |
44544928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 51846024 - 51845919
Alignment:
| Q |
1 |
tcaatcatgaatccatctgggtcatgaaaaaacaattgatccacttgaattccattttcttccaccattgcacgtttacaaccaattttcttatcattca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||| |||| |||| |
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| T |
51846024 |
tcaatcatgaatccatctgggtcatgaaaaaacaactgatccacttgaattccattttcctcaaccattgcacgttttaaaccaattttcatatccttca |
51845925 |
T |
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| Q |
101 |
gatatt |
106 |
Q |
| |
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||||| |
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|
| T |
51845924 |
aatatt |
51845919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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