View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_16 (Length: 523)

Name: NF1246_low_16
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_16
NF1246_low_16
[»] chr4 (5 HSPs)
chr4 (376-474)||(24360164-24360262)
chr4 (7-102)||(32183076-32183171)
chr4 (128-179)||(24360499-24360550)
chr4 (295-342)||(24360300-24360347)
chr4 (222-266)||(24360376-24360420)
[»] chr6 (1 HSPs)
chr6 (24-102)||(15858910-15858989)
[»] chr2 (1 HSPs)
chr2 (130-175)||(41832434-41832479)


Alignment Details
Target: chr4 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 376 - 474
Target Start/End: Complemental strand, 24360262 - 24360164
Alignment:
Q  376 caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaac 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24360262 caaaccgttttctttttcaactagactcatcaaccaaccaactcctctttctgtttctctctcactactcttccctaatttgtaagcaaaccccacaac 24360164  T

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Target: chr4; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 32183076 - 32183171
Alignment:
Q  7 gcatgcagtttggtagacagcagtgggtgctggttgtgggttgttgttccagggcctgttttggtggcttgtggtgaggctgagcgttgtttgtgg 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32183076 gcatgcagtttggtagacagcagtgggtgctggttgtgggttgttgttccagggcctgttttggtggcttgtggtgaggctgagcgttgtttgtgg 32183171  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 128 - 179
Target Start/End: Complemental strand, 24360550 - 24360499
Alignment:
Q  128 tcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24360550 tcattatgtgaagtggaagcaaataacttggcttcattataaaacaaagttg 24360499  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 24360347 - 24360300
Alignment:
Q  295 caaggccatggagtcaaagacaagaagacacacacacatctaaatatt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24360347 caaggccatggagtcaaagacaagaagacacacacacatctaaatatt 24360300  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 24360420 - 24360376
Alignment:
Q  222 ctggcacactgtgattcatgtatggtgattaccttgtgagtgaag 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  24360420 ctggcacactgtgattcatgtatgatgattaccttgtgagtgaag 24360376  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 15858910 - 15858989
Alignment:
Q  24 cagcagtgggtgctggttgtgggttgtt-gttccagggcctgttttggtggcttgtggtgaggctgagcgttgtttgtgg 102  Q
    |||||||||||||||||| |||| |||| |||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  15858910 cagcagtgggtgctggttctggggtgtttgttttagggcctgttttggtggcttgtggtgaggctgcgcgttgtttgtgg 15858989  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 41832479 - 41832434
Alignment:
Q  130 attatgtgaagtggaagcaaataacttggcttcattataaaacaaa 175  Q
    ||||||||||||||||||||| ||||| ||||  ||||||||||||    
T  41832479 attatgtgaagtggaagcaaaaaacttagcttggttataaaacaaa 41832434  T

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