View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_17 (Length: 518)

Name: NF1246_low_17
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_17
NF1246_low_17
[»] chr4 (6 HSPs)
chr4 (96-505)||(39336858-39337267)
chr4 (427-505)||(35785895-35785973)
chr4 (427-505)||(55018560-55018638)
chr4 (427-505)||(23703163-23703241)
chr4 (427-505)||(38157823-38157901)
chr4 (438-505)||(7107710-7107777)
[»] chr8 (1 HSPs)
chr8 (428-505)||(21143275-21143352)
[»] chr5 (2 HSPs)
chr5 (427-505)||(13374550-13374628)
chr5 (427-496)||(9671588-9671657)
[»] scaffold0060 (1 HSPs)
scaffold0060 (427-507)||(12587-12667)
[»] chr1 (2 HSPs)
chr1 (427-505)||(52794493-52794570)
chr1 (427-468)||(9627130-9627171)
[»] chr2 (1 HSPs)
chr2 (427-481)||(42929731-42929785)


Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 96 - 505
Target Start/End: Original strand, 39336858 - 39337267
Alignment:
Q  96 agatgtctcaacctcaatctccttcctttctctgtgaagaaccaaacaccttcgaagatgaatccctcaccgattcagaaacaattaccaacgacccatc 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39336858 agatgtctcaacctcaatctccttcctttctctgtgaagaaccaaacaccttcgaagatgaatccctcaccgattcagaaaccattaccaacgacccatc 39336957  T
Q  196 tgctacaaagcttcaatctttatcgattttgttcaacaatgatatgttttgggaagacgatgaagttctttcgttaatcatgaaagagaaagaaacccat 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  39336958 tgctacaaagcttcaatctttatcgattttgttcaacaatgatatgttttgggaagacgatgaagttctttctttaatcatgaaagagaaagaaacccat 39337057  T
Q  296 ttgattaatgatgattttgttattgatggatctttgaatgagtctcgtgttgaaggtgtcaattgggtttctagagtttgtgctcattatgggttttcta 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39337058 ttgattaatgatgattttgttattgatggatctttgaatgagtctcgtgttgaaggtgtcaattgggtttctagagtttgtgctcattatgggttttcta 39337157  T
Q  396 ctttgaccactgttcttgctgttaactactttgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgc 495  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39337158 ctttgaccactgttcttgctgtcaactactttgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagctcactgctgttgc 39337257  T
Q  496 ttgtttgtct 505  Q
    ||||||||||    
T  39337258 ttgtttgtct 39337267  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 35785973 - 35785895
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||    
T  35785973 tgatagattcgttactagtttgatatttcaaaaggataagccatggatcactcagattactgttgttgcttgtttgtct 35785895  T

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Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 55018560 - 55018638
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||||||||| ||||||||  ||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  55018560 tgatagattcgttattagtttgatatttcaaaaggataagccatggatcactcagcttactgttgttgcttgtttgtct 55018638  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 23703163 - 23703241
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    ||||||||| |||||||||||||  ||||||||| ||||||| ||||| |||||| |||||||||||||||||||||||    
T  23703163 tgatagatttgttactagtttgatatttcaaaagaataagccatggatcactcaggttactgctgttgcttgtttgtct 23703241  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 427 - 505
Target Start/End: Original strand, 38157823 - 38157901
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||||||||||||||||||  ||||||||||||||| | ||||| ||||| ||||||| ||||||||||||||||    
T  38157823 tgatagattcgttactagtttgatatttcaaaaggataagtcatggatcactcatcttactgttgttgcttgtttgtct 38157901  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 438 - 505
Target Start/End: Original strand, 7107710 - 7107777
Alignment:
Q  438 ttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    ||||||||||||  ||||||||||||||| | ||||| | |||| |||||| ||||||||||||||||    
T  7107710 ttactagtttgatatttcaaaaggataagtcatggatcattcagattactgttgttgcttgtttgtct 7107777  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 428 - 505
Target Start/End: Original strand, 21143275 - 21143352
Alignment:
Q  428 gatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||| |||||||||||||  ||||||||||||||||| ||||| |||||| |||||| ||||||||||||||||    
T  21143275 gatagatttgttactagtttgatatttcaaaaggataagccatggatcactcagattactgttgttgcttgtttgtct 21143352  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 13374628 - 13374550
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||||||||||||||||||  |||||||||||| || | ||||| |||||| |||||| ||||||||||||||||    
T  13374628 tgatagattcgttactagtttgatatttcaaaaggatgagtcatggatcactcagattactgttgttgcttgtttgtct 13374550  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 427 - 496
Target Start/End: Complemental strand, 9671657 - 9671588
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgct 496  Q
    ||||| |||||||||||||||||  ||||||||||||||||| ||||| |||||| ||| || |||||||    
T  9671657 tgatatattcgttactagtttgatatttcaaaaggataagccatggatcactcagattattgttgttgct 9671588  T

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Target: scaffold0060 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 507
Target Start/End: Original strand, 12587 - 12667
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtctgt 507  Q
    |||||||||||||||||||||||  ||||||||||||||| | ||||| |||||  |||||  ||||||||||||||||||    
T  12587 tgatagattcgttactagtttgatatttcaaaaggataagtcatggatcactcaaattactattgttgcttgtttgtctgt 12667  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 427 - 505
Target Start/End: Complemental strand, 52794570 - 52794493
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcagcttactgctgttgcttgtttgtct 505  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| |||||| || ||| |||| |||||||||||    
T  52794570 tgatagattcgttactagtttgatatttcaaaaggataagccatggatcactcagattcctg-tgtttcttgtttgtct 52794493  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 9627130 - 9627171
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagcc 468  Q
    |||||||||||||||||||||||  |||||||||||||||||    
T  9627130 tgatagattcgttactagtttgatatttcaaaaggataagcc 9627171  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 42929731 - 42929785
Alignment:
Q  427 tgatagattcgttactagtttgaagtttcaaaaggataagccttggatgactcag 481  Q
    ||||||||||||||||||||  |  ||||||||||||||||| ||||| ||||||    
T  42929731 tgatagattcgttactagttatatatttcaaaaggataagccatggatcactcag 42929785  T

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