View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_18 (Length: 500)
Name: NF1246_low_18
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 150 - 346
Target Start/End: Complemental strand, 50419841 - 50419645
Alignment:
| Q |
150 |
gggtagattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacat |
249 |
Q |
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| T |
50419841 |
gggttgattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacat |
50419742 |
T |
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| Q |
250 |
acttagggattccagttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
346 |
Q |
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| T |
50419741 |
acttagggattccagttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
50419645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 373 - 473
Target Start/End: Complemental strand, 50419618 - 50419518
Alignment:
| Q |
373 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
472 |
Q |
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| T |
50419618 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
50419519 |
T |
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| Q |
473 |
g |
473 |
Q |
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| T |
50419518 |
g |
50419518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 150 - 244
Target Start/End: Original strand, 13046123 - 13046214
Alignment:
| Q |
150 |
gggtagattattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcac |
244 |
Q |
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| T |
13046123 |
gggttgattattcttgcagaagcaaaccaaccacagtgaagatggatatcataaggagcacatcc---agaaacacaagtgttaacaatttgcac |
13046214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 9013231 - 9013177
Alignment:
| Q |
157 |
ttattcttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcaca |
211 |
Q |
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| T |
9013231 |
ttattcttgcagaagcaaaccaaccacagtgaagatggatatcattaggagcaca |
9013177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 8979830 - 8979797
Alignment:
| Q |
157 |
ttattcttgcagaagcaaaccagccacagtgaag |
190 |
Q |
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| T |
8979830 |
ttattcttgcagaagcaaaccaaccacagtgaag |
8979797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 190
Target Start/End: Complemental strand, 8997108 - 8997075
Alignment:
| Q |
157 |
ttattcttgcagaagcaaaccagccacagtgaag |
190 |
Q |
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| T |
8997108 |
ttattcttgcagaagcaaaccaaccacagtgaag |
8997075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 38468132 - 38468191
Alignment:
| Q |
1 |
agacccagaaaagtgtgtgagacaaatattagagcatagaagcaaagttgtggaagtact |
60 |
Q |
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| T |
38468132 |
agacccataaaagtgtgtgatacaaatcttagatcatataatcaaagttgtgtaagtact |
38468191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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