View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_19 (Length: 500)
Name: NF1246_low_19
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 93 - 489
Target Start/End: Complemental strand, 54703604 - 54703214
Alignment:
| Q |
93 |
gtattaatatattataatgtttataaattatatcatgacattagctttctttcaatcaactgctttataatgtattacattgtgacaatatcgttagatc |
192 |
Q |
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| T |
54703604 |
gtattaatatattataatgtttataaattagatcatgacattagctttctttcaatcaactactttataatgtattacattgtgacaatat----agatc |
54703509 |
T |
|
| Q |
193 |
attgtgacattagctttagaatttcttatgaagctcgctgtcgtccatgttgtcgcatcagaacatcttctgaatctggtaa-tataacatggtcgatga |
291 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
54703508 |
attgtgacattagctttagaatttcttatgaagcccgctgtcgtccatgttgtcgcatcagaacatcttatgaatctggtaaatataacatggtcgatga |
54703409 |
T |
|
| Q |
292 |
actaacagtgaagttatgatggttcaagcttagatattgttatggattataacaatatttgcaaccaatgagaacaacaaaaagcgcaattagcgaccaa |
391 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
54703408 |
actaacagtgaagttatgatggttca---ttagatattgttatggattataacaatatttgcaaccaatgagaacaacaaaaagcgcaattagtgaccaa |
54703312 |
T |
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| Q |
392 |
acaaaactagaaaaacaaccagtaaaccagcactaaaaagaagagagacagaagaagataacaccaagaaattacgtggttcaaccttagagacctat |
489 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54703311 |
acaaaactagaaaaacaaccagtaaaccagccttaaaaagaagagagacagaagaagataacaccaagaatttacgtggttcaaccttagagacctat |
54703214 |
T |
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