View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_2 (Length: 775)

Name: NF1246_low_2
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_2
NF1246_low_2
[»] chr2 (3 HSPs)
chr2 (126-763)||(11330246-11330871)
chr2 (126-271)||(7178030-7178175)
chr2 (343-422)||(37423059-37423137)
[»] scaffold0288 (1 HSPs)
scaffold0288 (343-461)||(9860-9979)
[»] chr1 (3 HSPs)
chr1 (357-461)||(5362808-5362908)
chr1 (341-424)||(35409005-35409088)
chr1 (357-461)||(52319052-52319157)
[»] chr5 (6 HSPs)
chr5 (347-425)||(41658759-41658837)
chr5 (335-425)||(41685853-41685942)
chr5 (343-462)||(37097872-37097987)
chr5 (355-427)||(864428-864501)
chr5 (344-381)||(17896035-17896072)
chr5 (370-443)||(38646660-38646732)
[»] chr4 (4 HSPs)
chr4 (342-392)||(6861263-6861313)
chr4 (401-453)||(33911970-33912022)
chr4 (345-424)||(33827431-33827509)
chr4 (343-396)||(20619746-20619799)
[»] scaffold0301 (1 HSPs)
scaffold0301 (372-461)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (401-453)||(35908605-35908657)


Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 126 - 763
Target Start/End: Complemental strand, 11330871 - 11330246
Alignment:
Q  126 atgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaccctacgagatacaatt 225  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  11330871 atgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaacctgcgagatacaatt 11330772  T
Q  226 cccaaagcaatgtttcggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaatnnnnnnnctttaggctaatagcttcagttaaat 325  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  11330771 cccaaagcaatgttccggacctgcaacaaaagaattcggatattaaatgagtacagtagaggaaaataaaaaaactttaggctaatagcttcagttaaat 11330672  T
Q  326 tgggttatagtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 425  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  11330671 tgggttatagtcccacataggtagctcggttggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccgg----------- 11330583  T
Q  426 tcccccttccctctaacaatttactaacaagtaacaactaacatttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaatgtccaat 525  Q
     ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330582 -cccccttccctctaaaaatttactaacaagtaacaactaacatttgcctatagaaaaaagttatacttattgattgaagttgctgcatgaatgtccaat 11330484  T
Q  526 ttcacttccctttagagtttgatgaattttactgctataatctaagtaggcactctacttagggtaatatctaggctaacctgctcaacatagtattgga 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330483 ttcacttccctttagagtttgatgaattttactgctataatctaagtaggcactctacttagggtaatatctaggctaacctgctcaacatagtattgga 11330384  T
Q  626 cattgttaatattagtcttttctgaaaggttatgttacttattccattcgctatatctaataagatgatcagtagcaactgaaaatttaatcaaactatt 725  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330383 cattgttaatattagtcttttctgaaaggttatgttacttattccatttgctatatctaataagatgatcagtagcaactgaaaatttaatcaaactatt 11330284  T
Q  726 atcttattcttgttccaatgtagtatgtacctcagaat 763  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11330283 atcttattcttgttccaatgtagtatgtacctcagaat 11330246  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 126 - 271
Target Start/End: Original strand, 7178030 - 7178175
Alignment:
Q  126 atgatgcctgaaaacaagtagaagagctagcaatatttacttactatcaattgtctccatcacagtcggctgtttccaattaaccctacgagatacaatt 225  Q
    ||||||||| || |||||| ||| ||||| |||||||||||||||||||||||||||||| |||||| | ||||||||||| || ||||| |||||||||    
T  7178030 atgatgcctaaatacaagtggaaaagctaacaatatttacttactatcaattgtctccataacagtcagttgtttccaatttactctacgggatacaatt 7178129  T
Q  226 cccaaagcaatgtttcggacctgcaacaaaagaattcggatattaa 271  Q
    ||||| |||||||| |||||||||||||||| |||  |||||||||    
T  7178130 cccaatgcaatgttccggacctgcaacaaaataatcaggatattaa 7178175  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 343 - 422
Target Start/End: Complemental strand, 37423137 - 37423059
Alignment:
Q  343 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaac 422  Q
    |||||||||| || ||||||||||||||  ||||||||| | ||||||| | || ||| ||||||| |||||||||||||    
T  37423137 taggtagctcagttggtgagctaagggatattgaaggagttataagaagaaagtcccgggttcgat-cccggaaactaac 37423059  T

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Target: scaffold0288 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 343 - 461
Target Start/End: Original strand, 9860 - 9979
Alignment:
Q  343 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctc-taa 441  Q
    |||||||||| || |||||||| ||||| ||||||||||||||||||||||||| ||| ||| ||  ||| ||||||||||||||||||| | ||| |||    
T  9860 taggtagctcagttggtgagctcagggatgttgaaggagatttaagaaggaggtcccgggtttgactcccagaaactaacatttccccctcctctcttaa 9959  T
Q  442 caatttactaacaagtaaca 461  Q
    |||||||||||||| |||||    
T  9960 caatttactaacaactaaca 9979  T

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Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 5362808 - 5362908
Alignment:
Q  357 ggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaag 456  Q
    |||||||||||||| ||||||||||||||||||||||||| ||| |||| || || |||||||||||||| ||||||||||| |||||  |||||||||     
T  5362808 ggtgagctaagggaggttgaaggagatttaagaaggaggtcccgtgttcaat-cctggaaactaacattt-ccccttccctccaacaa--tactaacaac 5362903  T
Q  457 taaca 461  Q
    |||||    
T  5362904 taaca 5362908  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 341 - 424
Target Start/End: Complemental strand, 35409088 - 35409005
Alignment:
Q  341 cataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 424  Q
    ||||| ||| |||||  |||| ||||||| ||||||||||| || ||| |||||||||||||||  ||| || |||||||||||    
T  35409088 catagatagttcggttagtgaactaagggtcgttgaaggagtttaaaggaggaggttccgagtttcatctccagaaactaacat 35409005  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 357 - 461
Target Start/End: Original strand, 52319052 - 52319157
Alignment:
Q  357 ggtgagctaagggacgttgaaggagatttaagaaggaggt-tccgagttcgatccccggaaactaacatttcccccttcc-ctctaacaatttactaaca 454  Q
    ||||| ||||||| ||||||||||||||||||  |||||| || || |||||| | | |||||||||||||| |||| || || ||||||||| ||||||    
T  52319052 ggtgaactaaggggcgttgaaggagatttaagccggaggtctcaga-ttcgattctcagaaactaacatttctccctcccactttaacaatttgctaaca 52319150  T
Q  455 agtaaca 461  Q
    | |||||    
T  52319151 actaaca 52319157  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 347 - 425
Target Start/End: Complemental strand, 41658837 - 41658759
Alignment:
Q  347 tagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 425  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||||| | |||  || ||| ||||||||||||||||    
T  41658837 tagctcggttggtgagctaagggacgtcgaaggaggtttaagaaggagttcccggatttgattcccggaaactaacatt 41658759  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 425
Target Start/End: Complemental strand, 41685942 - 41685853
Alignment:
Q  335 gtcccacataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatt 425  Q
    |||||||||||||||||| ||||||||  ||||||||||  |||||||||| |||||||||| | | |||| || ||||||||||||||||    
T  41685942 gtcccacataggtagctcagtcggtgatataagggacgtcaaaggagatttgagaaggaggtcctgggttccat-cccggaaactaacatt 41685853  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 343 - 462
Target Start/End: Original strand, 37097872 - 37097987
Alignment:
Q  343 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaac 442  Q
    ||||||||||||| ||||||||||||||| |||||||||||||   ||| |||||||| |||| |||| | | |||||||||||||| || |  |||| |    
T  37097872 taggtagctcggttggtgagctaagggacattgaaggagattt---aagtaggttccgggttctatcctcag-aactaacatttccctctcctatctacc 37097967  T
Q  443 aatttactaacaagtaacaa 462  Q
    ||||||| ||||| ||||||    
T  37097968 aatttacgaacaactaacaa 37097987  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 355 - 427
Target Start/End: Original strand, 864428 - 864501
Alignment:
Q  355 tcggtgagctaa-gggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttc 427  Q
    |||||||||||| |||||| | |||||| || ||| ||||| | ||| ||| ||||||||||||||||||||||    
T  864428 tcggtgagctaaagggacgatcaaggagtttgaaggaggagatcccgggtttgatccccggaaactaacatttc 864501  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 381
Target Start/End: Original strand, 17896035 - 17896072
Alignment:
Q  344 aggtagctcggtcggtgagctaagggacgttgaaggag 381  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  17896035 aggtagctcggttggtgagctaagggacattgaaggag 17896072  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 370 - 443
Target Start/End: Original strand, 38646660 - 38646732
Alignment:
Q  370 acgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaaca 443  Q
    ||||||||||||||||| || ||| |||  ||||||||||| || ||||||||||||| ||||  |||||||||    
T  38646660 acgttgaaggagattta-gatggatgttttgagttcgatcctcgaaaactaacatttctccctctcctctaaca 38646732  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 392
Target Start/End: Original strand, 6861263 - 6861313
Alignment:
Q  342 ataggtagctcggtcggtgagctaagggacgttgaaggagatttaagaagg 392  Q
    |||||||| ||||| ||||||||||||||| ||||| ||||||||||||||    
T  6861263 ataggtagttcggttggtgagctaagggacattgaaagagatttaagaagg 6861313  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 33911970 - 33912022
Alignment:
Q  401 agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac 453  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||| |||||||    
T  33911970 agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac 33912022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 424
Target Start/End: Original strand, 33827431 - 33827509
Alignment:
Q  345 ggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacat 424  Q
    ||||||||| | |||| | ||||| |||||||||||| |||||| |||||||  || ||||||| |||||||||||||||    
T  33827431 ggtagctcgattggtgcgttaaggaacgttgaaggagctttaaggaggaggtctcgggttcgat-cccggaaactaacat 33827509  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 343 - 396
Target Start/End: Original strand, 20619746 - 20619799
Alignment:
Q  343 taggtagctcggtcggtgagctaagggacgttgaaggagatttaagaaggaggt 396  Q
    |||| |||||||| ||||||||||||||||||| || || || |||||||||||    
T  20619746 taggcagctcggttggtgagctaagggacgttgtagcagtttgaagaaggaggt 20619799  T

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Target: scaffold0301 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 372 - 461
Target Start/End: Original strand, 5879 - 5967
Alignment:
Q  372 gttgaaggagatttaagaaggaggttccgagttcgatccccggaaactaacatttcccccttccctctaacaatttactaacaagtaaca 461  Q
    ||||||||| ||||||||||||| ||    ||||||||| |||||||||| ||||| |  ||||||| |||||||||||||||| |||||    
T  5879 gttgaaggaaatttaagaaggagattttcggttcgatccacggaaactaa-atttctctattccctccaacaatttactaacaactaaca 5967  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 453
Target Start/End: Original strand, 35908605 - 35908657
Alignment:
Q  401 agttcgatccccggaaactaacatttcccccttccctctaacaatttactaac 453  Q
    |||| ||| ||| ||||||||||||||||||| |||||||||||| |||||||    
T  35908605 agttggattcccagaaactaacatttccccctcccctctaacaatgtactaac 35908657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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