View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_21 (Length: 489)
Name: NF1246_low_21
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 37 - 474
Target Start/End: Original strand, 42185930 - 42186367
Alignment:
| Q |
37 |
ccctttctccaccatctgaactttaagccgagacgcttccttcaacaaaccacctgtaacatgagcagatatcaacgaatcgtaagtaataacagttgga |
136 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42185930 |
ccctttctccaccatctgaactttaagccgagacacttccttcaacaaaccacctctaacatgagcagatatcaacgaatcgtaagtaataacatttgga |
42186029 |
T |
|
| Q |
137 |
gaaaagtcattactttccatatctttaagaacctgcaaagcctctttgggtcgtctagccttcgcaaaaacatctaataacgcattataagtaaccctat |
236 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42186030 |
gaaaagccattactttccatatctttaagaacctgcaaagcctctttgggacgtctaaccttcgcaaaaacatctaacaacgcattataagtaactctat |
42186129 |
T |
|
| Q |
237 |
caggaacaaaaaccgcagacttaatccggtcaaacacatttacagcttcctcatataacgaaccttgacgacaacaagtgataagtgtattataaatata |
336 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186130 |
caggaacaaaacccgcagacttaatccggtcaaacacatttacagcttcctcatataacgaaccttgacgacaacaagtgataagtgtattataaatata |
42186229 |
T |
|
| Q |
337 |
caaatccggaacaactcaatttgttttcatagaataaaaaatggtagtaacacgagaccaaggcatacccattttgccataaacattcaaaatggaattg |
436 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42186230 |
caaatccggaacaactccatttgttttcatagaataaaaaatggcagtaacacgagaccaaggcatacccattttgccataaacattcaaaatggaattg |
42186329 |
T |
|
| Q |
437 |
taagtaacaagagtaggggtacaaccatcacgttgcat |
474 |
Q |
| |
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| T |
42186330 |
taagtaacaagagtaggggtataaccatcacgttgcat |
42186367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 30 - 474
Target Start/End: Original strand, 21209564 - 21210008
Alignment:
| Q |
30 |
gcttaatccctttctccaccatctgaactttaagccgagacgcttccttcaacaaaccacctgtaacatgagcagatatcaacgaatcgtaagtaataac |
129 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
21209564 |
gcttaatccctttctccaccatctgaactttaagccgggatgcttcctccaaccaaccacctctaacatgagcagatatcaacgaattgtaagtaataat |
21209663 |
T |
|
| Q |
130 |
agttggagaaaagtcattactttccatatctttaagaacctgcaaagcctctttgggtcgtctagccttcgcaaaaacatctaataacgcattataagta |
229 |
Q |
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| T |
21209664 |
agttggagaaaagccattactttccatatctttaagaacctgcaaagcctctttgggtcgtctagccttcgcaaaaacatctaacaacgcattataagta |
21209763 |
T |
|
| Q |
230 |
accctatcaggaacaaaaaccgcagacttaatccggtcaaacacatttacagcttcctcatataacgaaccttgacgacaacaagtgataagtgtattat |
329 |
Q |
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|||||||||||||||||| |||||||||||||| | ||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
21209764 |
accctatcaggaacaaaacccgcagacttaatctgatcaaacacattaacaacttcctcatataacgaacctcggcgacaacaagtgataagtgtattat |
21209863 |
T |
|
| Q |
330 |
aaatatacaaatccggaacaactcaatttgttttcatagaataaaaaatggtagtaacacgagaccaaggcatacccattttgccataaacattcaaaat |
429 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
21209864 |
aagtatacaaatccggaacaactccatttgttttcatagaatcaaaaatggcagtaacacgagaccaagacatacccattttgccataaacattcaaaat |
21209963 |
T |
|
| Q |
430 |
ggaattgtaagtaacaagagtaggggtacaaccatcacgttgcat |
474 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
21209964 |
ggaattgtaagtaacaagagtaggggtacaaccgtcacgttgcat |
21210008 |
T |
|
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