View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_23 (Length: 485)
Name: NF1246_low_23
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_23 |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 3 - 337
Target Start/End: Complemental strand, 2332499 - 2332167
Alignment:
| Q |
3 |
catgtccaataatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaat |
102 |
Q |
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| T |
2332499 |
catgcccaacaatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatctttaat |
2332400 |
T |
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| Q |
103 |
cctttccatagttacaggcaagagaagctggtccatcaagttaatgctaagagatggaatattatccagttgtaaactatatgagaggtttacagggatc |
202 |
Q |
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| T |
2332399 |
cctttccatagtgacaggcaagagaagctggtccatcaagctaatgccaagagatggaatattatccagttgtaaactatatgagaggtttacagggatc |
2332300 |
T |
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| Q |
203 |
atttgattggaatagattcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcaccatatgttttccacattcaaaccagaaatttta |
302 |
Q |
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| T |
2332299 |
atttgattgggatagatgcataaaaaactttgaggcttcccttttgagagtgcttgcattcgtgcacc--atgttttccacattcaaaccagaaatttta |
2332202 |
T |
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| Q |
303 |
tttcgtcgtcttctgatgatggcctgcgtatataa |
337 |
Q |
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| T |
2332201 |
tttcgccgtcttctgatgatggcctgcgtgtataa |
2332167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 420 - 456
Target Start/End: Complemental strand, 2332085 - 2332049
Alignment:
| Q |
420 |
ttgcttatggcttttgcacatataaaacgttttgatc |
456 |
Q |
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| T |
2332085 |
ttgcttatggcttttgcacatataaaacgttttgatc |
2332049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 1261818 - 1261909
Alignment:
| Q |
8 |
ccaataatatgccaacaaattttgtaaaatatcggttgaaatccatcatgtcctagggctttgtaagagtgcatagggaaaatagaatcttt |
99 |
Q |
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|||| |||||||||| || ||||| |||| || |||||||| ||||| | || ||||||||||||||||||| | |||||||| |||||| |
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| T |
1261818 |
ccaacaatatgccaataagttttgaaaaaaataggttgaaaaccatctggacccggggctttgtaagagtgcattgagaaaatagcatcttt |
1261909 |
T |
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