View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_24 (Length: 483)

Name: NF1246_low_24
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_24
NF1246_low_24
[»] chr2 (2 HSPs)
chr2 (9-389)||(42694174-42694554)
chr2 (39-250)||(42687133-42687344)
[»] chr8 (15 HSPs)
chr8 (37-172)||(6290507-6290642)
chr8 (37-169)||(6353602-6353734)
chr8 (37-167)||(6275760-6275890)
chr8 (37-169)||(6425292-6425424)
chr8 (33-178)||(6452163-6452308)
chr8 (37-169)||(6364475-6364607)
chr8 (37-166)||(7460677-7460806)
chr8 (39-178)||(6458256-6458395)
chr8 (34-169)||(6392098-6392233)
chr8 (48-169)||(6371306-6371427)
chr8 (82-169)||(6411262-6411349)
chr8 (37-115)||(6322673-6322751)
chr8 (42-166)||(6333189-6333313)
chr8 (48-169)||(6264933-6265054)
chr8 (230-267)||(6264835-6264872)
[»] chr5 (1 HSPs)
chr5 (37-167)||(9603038-9603168)
[»] chr3 (1 HSPs)
chr3 (98-178)||(36743947-36744027)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 42694554 - 42694174
Alignment:
Q  9 gaagaatattaaaaaatcgtttggcaggcatatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggag 108  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42694554 gaagaaaattaaaaaattatttggcaggcatatcttcctagtgaaacaccggctccattagtccattatagagaagaagaattgaacaatttaagaggag 42694455  T
Q  109 atggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctataatgatttaggaaatccggagaaaggtgacaatcatgctcgtcctgt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42694454 atggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatccggagaaaggtgacaatcatgctcgtcctgt 42694355  T
Q  209 tcttggcgggcctgacacatatccttatcctcgtcggggaagaacgggcagaaaaccaaatccgaaaggtactaacacattcagtaatgttttatcatct 308  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42694354 tcttggcgggtctgacacatatccttatcctcgtcggggaagaacgggcagaaaaccaaatccgaaaggtactaacacattcagtaatgttttatcatct 42694255  T
Q  309 taccatatcatttaataatttggtacttggaatttgcatcaaactttatgaaatcaagaatgttaatgtgttgataatatt 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42694254 taccatatcatttaataatttggtacttggaatttgcatcaaactttatgaaatcaagaatgttaatgtgttgataatatt 42694174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 39 - 250
Target Start/End: Original strand, 42687133 - 42687344
Alignment:
Q  39 tatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaa 138  Q
    |||||||| |||||||||||  ||||| ||||  | |||||||||||||||||| | |||||||| ||||||||||||||||| |||||   |   ||||    
T  42687133 tatcttccaagtgaaacaccatctccactagtcaagtatagagaagaagaattgcaaaatttaaggggagatggaacaggagagcgcaagttacatgaaa 42687232  T
Q  139 gaatctatgattatgatgtctataatgatttaggaaatccggagaaaggtgacaatcatgctcgtcctgttcttggcgggcctgacacatatccttatcc 238  Q
    | ||||| ||||| |||||||| ||||||||||| ||||| ||  | ||||| | |  |||||| ||||||||||| ||| ||  |||| ||||||| ||    
T  42687233 ggatctacgattacgatgtctacaatgatttaggcaatccagatcacggtgaaagttttgctcgccctgttcttggagggtctagcacacatccttaccc 42687332  T
Q  239 tcgtcggggaag 250  Q
    |||  |||||||    
T  42687333 tcgcaggggaag 42687344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 6290642 - 6290507
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||| ||||| ||||||||||| |||||||||||  | |||||| ||||||||||||| | |||||||||||||||||||||||| ||||| ||||||||    
T  6290642 cataccttccaagtgaaacaccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatggga 6290543  T
Q  137 aagaatctatgattatgatgtctataatgatttagg 172  Q
    |||||| |||||||| |||||||| |||||||||||    
T  6290542 aagaatatatgattacgatgtctacaatgatttagg 6290507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 6353734 - 6353602
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||| ||||| |||||||||||||||||||||||  | || ||| ||||||||||||| | |||||||||||||||||| ||||| ||||| ||||||||    
T  6353734 cataccttccaagtgaaacaccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatggga 6353635  T
Q  137 aagaatctatgattatgatgtctataatgattt 169  Q
    |||||| |||||||| |||||||| ||||||||    
T  6353634 aagaatatatgattacgatgtctacaatgattt 6353602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 37 - 167
Target Start/End: Complemental strand, 6275890 - 6275760
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||||||||| |||||||||||  ||||||||||  | |||||| ||||||| ||||||| |||||||||||||||||||||||| || |||||||||||    
T  6275890 catatcttccaagtgaaacaccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatggga 6275791  T
Q  137 aagaatctatgattatgatgtctataatgat 167  Q
    ||| |||||||| || |||||||| ||||||    
T  6275790 aaggatctatgactacgatgtctacaatgat 6275760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 6425424 - 6425292
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||| ||||| |||||||||||||||||||| ||  | |||||| ||||||| ||||| | ||||||||||||||||| |||||| ||||| ||||||||    
T  6425424 cataccttccaagtgaaacaccggctccattggtgtactatagacaagaagagttgaagactttaagaggagatggaaaaggagagcgcaaggaatggga 6425325  T
Q  137 aagaatctatgattatgatgtctataatgattt 169  Q
    ||| ||||||||||| |||||||| ||||||||    
T  6425324 aaggatctatgattacgatgtctacaatgattt 6425292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 33 - 178
Target Start/End: Complemental strand, 6452308 - 6452163
Alignment:
Q  33 caggcatatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaat 132  Q
    ||||| |||||||| ||| ||||||| |||||||||  ||| | |||||||||||| ||| | ||| |||||||||||||||| ||||||||||||||||    
T  6452308 caggcgtatcttccaagtcaaacaccagctccattaaatcactttagagaagaagagttgcagaatctaagaggagatggaaccggagaacgcaaagaat 6452209  T
Q  133 gggaaagaatctatgattatgatgtctataatgatttaggaaatcc 178  Q
    |||| || || || ||||||||||| ||||||||| | ||||||||    
T  6452208 gggataggatatacgattatgatgtttataatgatctcggaaatcc 6452163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 6364607 - 6364475
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||| ||||| ||||||||||| ||||| |||||  | || ||| ||||||||||||| | |||||||||||||||||| ||||| || || ||||||||    
T  6364607 cataccttccaagtgaaacaccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatggga 6364508  T
Q  137 aagaatctatgattatgatgtctataatgattt 169  Q
    |||||| ||||||||||||||||| ||||||||    
T  6364507 aagaatatatgattatgatgtctacaatgattt 6364475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 166
Target Start/End: Complemental strand, 7460806 - 7460677
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||| ||||| |||| |||||| |||||||||||  | || ||| ||||||||||||| | |||||||||||||||||| ||||| ||||| ||||||||    
T  7460806 cataccttccaagtgcaacaccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatggga 7460707  T
Q  137 aagaatctatgattatgatgtctataatga 166  Q
     ||||| ||||||||||||||||| |||||    
T  7460706 cagaatatatgattatgatgtctacaatga 7460677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 39 - 178
Target Start/End: Complemental strand, 6458395 - 6458256
Alignment:
Q  39 tatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaa 138  Q
    |||||||| ||| ||||||| |||||||||  |||||||||||||||||| ||| | | | |||||||||||||||| ||||| |||||||||  ||| |    
T  6458395 tatcttccaagtcaaacaccagctccattaaatcattatagagaagaagagttgcagactctaagaggagatggaactggagagcgcaaagaagcggata 6458296  T
Q  139 gaatctatgattatgatgtctataatgatttaggaaatcc 178  Q
    || | |||||||||||| | ||||||||||| ||||||||    
T  6458295 gagtttatgattatgatatttataatgatttgggaaatcc 6458256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 169
Target Start/End: Complemental strand, 6392233 - 6392098
Alignment:
Q  34 aggcatatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatg 133  Q
    ||||||| ||||  || |||||||| ||||||||| |  | || ||| ||||||||||||| | |||||||||||||||||| ||||| || || |||||    
T  6392233 aggcataccttctaagggaaacaccagctccattactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatg 6392134  T
Q  134 ggaaagaatctatgattatgatgtctataatgattt 169  Q
    ||| ||||| ||||||||||||||||| ||||||||    
T  6392133 ggacagaatatatgattatgatgtctacaatgattt 6392098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 6371427 - 6371306
Alignment:
Q  48 agtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatg 147  Q
    ||||||||||| |||||||||||  | || ||| ||||||| ||||| | |||||||||||||||||| || || |||||||||||||| || |||||||    
T  6371427 agtgaaacaccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatg 6371328  T
Q  148 attatgatgtctataatgattt 169  Q
    | || |||||||| ||||||||    
T  6371327 actacgatgtctacaatgattt 6371306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 6411349 - 6411262
Alignment:
Q  82 aagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctataatgattt 169  Q
    ||||||||||||| | |||||||||||||||||| ||||| || || | |||||| ||||| ||||||||||||||||| ||||||||    
T  6411349 aagaagaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgattt 6411262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 6322751 - 6322673
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaac 115  Q
    |||| ||||| ||||||||||| |||||||||||  | |||||||||||||||||||| | ||||||||||||||||||    
T  6322751 cataccttccaagtgaaacaccagctccattagtctactatagagaagaagaattgaagactttaagaggagatggaac 6322673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 166
Target Start/End: Complemental strand, 6333313 - 6333189
Alignment:
Q  42 cttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaa 141  Q
    ||||| || |||||||| |||||||||||  | || ||| ||||||||||||| | |||||||||||||||||| || || |||||||||| ||| || |    
T  6333313 cttccaagcgaaacaccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggatagga 6333214  T
Q  142 tctatgattatgatgtctataatga 166  Q
    ||||||| || ||||| || |||||    
T  6333213 tctatgactacgatgtttacaatga 6333189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 48 - 169
Target Start/End: Complemental strand, 6265054 - 6264933
Alignment:
Q  48 agtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatg 147  Q
    ||||||||||| |||||| | ||  | |||||| ||  ||| ||||| | |||||||||||||||||| || || |||||||||||||| ||| | ||||    
T  6265054 agtgaaacacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatg 6264955  T
Q  148 attatgatgtctataatgattt 169  Q
    |||||||||| || ||||||||    
T  6264954 attatgatgtttacaatgattt 6264933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 230 - 267
Target Start/End: Complemental strand, 6264872 - 6264835
Alignment:
Q  230 tccttatcctcgtcggggaagaacgggcagaaaaccaa 267  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  6264872 tccttatcctcgtaggggaagaacgggcagaaaaccaa 6264835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 9603038 - 9603168
Alignment:
Q  37 catatcttcctagtgaaacaccggctccattagttcattatagagaagaagaattgaacaatttaagaggagatggaacaggagaacgcaaagaatggga 136  Q
    |||||||||| ||| ||||||| |||||||||||  | || ||| ||||||||||| | ||| ||||||||||||| || ||| |||| |||||||||||    
T  9603038 catatcttccaagtcaaacaccagctccattagtctactacagacaagaagaattgcaaaatctaagaggagatggtactggacaacgaaaagaatggga 9603137  T
Q  137 aagaatctatgattatgatgtctataatgat 167  Q
    |||| | ||||||||||||||||| ||||||    
T  9603138 aagagtttatgattatgatgtctacaatgat 9603168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 178
Target Start/End: Original strand, 36743947 - 36744027
Alignment:
Q  98 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctataatgatttaggaaatcc 178  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| || |||||||| ||||||||    
T  36743947 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 36744027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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