View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_26 (Length: 471)
Name: NF1246_low_26
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 30 - 459
Target Start/End: Complemental strand, 3457133 - 3456704
Alignment:
| Q |
30 |
gtttgtttgaaatggtttgtgagatggagagtgattgtattgaagacatgatggacattgaagagttatcttcaatgtggccagaagatgttggaactga |
129 |
Q |
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| T |
3457133 |
gtttgtttgaaatggtttgtgagatggagagtgattgtattgaagacatgatggacattgaagagttatcttcaatgtggccagaagatgttggaactga |
3457034 |
T |
|
| Q |
130 |
tgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagctatagctgattttcaaaga |
229 |
Q |
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| T |
3457033 |
tgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagcaatagctgattttcaaaga |
3456934 |
T |
|
| Q |
230 |
ttaatggagcttacaaattatacagataaagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456933 |
ttaatggagcttacaaattatacagataaagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttc |
3456834 |
T |
|
| Q |
330 |
gagaagagcttgacaatcttagcaaacaaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagtta |
429 |
Q |
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| T |
3456833 |
gagaagagcttgacaatcttagcaaacaaaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagtta |
3456734 |
T |
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| Q |
430 |
tggcggagacaaacgtccggtttcaatatt |
459 |
Q |
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| T |
3456733 |
tggcggagacaaacgtccggtttcaatatt |
3456704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 158 - 419
Target Start/End: Complemental strand, 3481359 - 3481098
Alignment:
| Q |
158 |
ccaggaagagatcaagatatgttggaagaagtaacaatcttagaagaaccagctatagctgattttcaaagattaatggagcttacaaattatacagata |
257 |
Q |
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||||||| |||||| |||| ||||||||||||||| ||||||| |||||| ||||||||||||||||||| | ||||||||||| |||||||||||| |
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| T |
3481359 |
ccaggaatggatcaaaatattttggaagaagtaacagtcttagaggaaccaattatagctgattttcaaagaattgtggagcttacagattatacagata |
3481260 |
T |
|
| Q |
258 |
aagggtcatctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaaca |
357 |
Q |
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|||||| ||||| || ||| || | || ||||||||||||||||||| || || || ||| | ||||||||||||||||| ||||| ||||||||||| |
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| T |
3481259 |
tagggtcttctcagttagctaatctcgtgaaacattgggagtataagcaggcaaatgcagtttgccttcttcgagaagagctcgacaaccttagcaaaca |
3481160 |
T |
|
| Q |
358 |
aaggaaggaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaag |
419 |
Q |
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| T |
3481159 |
aaaggaggaagttgagcttaaaaagtgtgagatacttgaagacaataatagattcgaggaag |
3481098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 99 - 391
Target Start/End: Original strand, 48693755 - 48694050
Alignment:
| Q |
99 |
cttcaatgtggccagaagatgttggaactgatgttggaaaacaattcaacatagaaaaaccaggaagagatcaagatatgttggaagaagtaacaatctt |
198 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||| || ||||| |||||||| ||||||| ||||||||| |||| ||||||||| ||||| | |
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| T |
48693755 |
cttcaatgtggccagaagatattggagctgatgttggaaagcagttcaatatagaaaagccaggaaatgatcaagatgtgttagaagaagtatcaatcat |
48693854 |
T |
|
| Q |
199 |
agaagaa---ccagctatagctgattttcaaagattaatggagcttacaaattatacagataaagggtcatctcaattggcttatttaatgcaacattgg |
295 |
Q |
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||| ||| || ||||||||||||| | | | || ||||| || |||| ||||| ||||| || |||||||| || ||| | ||| |||||||| |
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| T |
48693855 |
agatgaagttacaactatagctgatttcaagcgtctcattgagctcacgaatttcacagaaaaaggttcttctcaattagcctatcttatgaaacattgg |
48693954 |
T |
|
| Q |
296 |
gagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaaggaagttgagcaaagaaaattggagata |
391 |
Q |
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||||||||||| |||| || || || ||||| ||||||| || ||||| || | ||||||||| |||| ||||||| ||| || ||||||||| |
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| T |
48693955 |
gagtataagcaggcgagcgtggcgcgtcttctaagagaagaactcgacaacctaaacaaacaaagacaggatgttgagctaaggaagttggagata |
48694050 |
T |
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