View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_28 (Length: 464)

Name: NF1246_low_28
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_28
NF1246_low_28
[»] chr1 (3 HSPs)
chr1 (89-435)||(10033229-10033573)
chr1 (8-90)||(10034274-10034356)
chr1 (8-90)||(10020609-10020689)
[»] chr3 (3 HSPs)
chr3 (221-435)||(8479391-8479603)
chr3 (89-185)||(2899284-2899380)
chr3 (185-219)||(8479322-8479356)
[»] chr4 (3 HSPs)
chr4 (221-435)||(41067757-41067969)
chr4 (185-220)||(41067694-41067729)
chr4 (95-185)||(8656683-8656773)
[»] chr5 (2 HSPs)
chr5 (221-435)||(19936597-19936809)
chr5 (185-220)||(19936843-19936878)
[»] chr2 (2 HSPs)
chr2 (95-185)||(32235006-32235096)
chr2 (136-185)||(30418630-30418679)


Alignment Details
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 89 - 435
Target Start/End: Complemental strand, 10033573 - 10033229
Alignment:
Q  89 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033573 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgttccggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattgatg 10033474  T
Q  189 aagtgcagacagacttgcaaatggacaaagcggacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgc 288  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10033473 aagtgcagacagacttgcaattggacaaagcggacatcagtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgc 10033374  T
Q  289 agaagtcgcaactccacaggaaaatgtaagcggggacactgtcgtatcacatcatagcagacatcattaggtgttatggcattggaacattcaacaaatg 388  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  10033373 agaagtcgcaactccacaggaaaatgtaagtggggacactgtcgtatcacatc--agcagacatcattagatgttatggcattggaacattcaacaaatg 10033276  T
Q  389 tgcaatccagaccaacagagacataagcgaattcaagaacagcagct 435  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  10033275 tgcaatccagatcaacagaaacataagcgaattcaagaacagcagct 10033229  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 10034356 - 10034274
Alignment:
Q  8 tagcataggttaacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 90  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  10034356 tagcaaaggttaacataacaataagggtggtttgaaaaaggcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacg 10034274  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 10020689 - 10020609
Alignment:
Q  8 tagcataggttaacataacaataagggtggtttgaaaaaggcttagagtatcagaaaatgtgcctcgtgtgtaagaaagtacg 90  Q
    ||||| ||| |||||||||||||||||||| |||||| |  ||||||||| ||| ||||||||||||||||||||||||||||    
T  10020689 tagcaaaggataacataacaataagggtggcttgaaaga--cttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacg 10020609  T

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Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 221 - 435
Target Start/End: Original strand, 8479391 - 8479603
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgtaagcg 320  Q
    ||||||||||||||||||||||  |||| |||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  8479391 gacatcggtatcaatcaaaagatgctgctttcaacatctgttcatattattgaggaaattgtagatgcagaagtcgcaactccacaggaaaatgtaagtg 8479490  T
Q  321 gggacactgtcgtatcacatcatagcagacatcattaggtgttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaat 420  Q
    | ||||||| |||||||||||  ||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||    
T  8479491 gtgacactgccgtatcacatc--agcagccatcattagatgttatggcattggaacattcagcaaatgtgcaatccagaccagcagagacagaagcgaat 8479588  T
Q  421 tcaagaacagcagct 435  Q
    |||||  ||||||||    
T  8479589 tcaagtgcagcagct 8479603  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Original strand, 2899284 - 2899380
Alignment:
Q  89 cgtattcgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| ||||| |||||||||||||||||||||   |  ||| ||| ||||||||| ||||||||| ||||||| |||||||  |||||||| ||||    
T  2899284 cgtatccgtgcctatgataaagaaaatgcagccaaccaatttatttcggttttatcaaagaaacagaagcaacatgtcaagaaacaacttcaaattg 2899380  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 219
Target Start/End: Original strand, 8479322 - 8479356
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagc 219  Q
    ||||||||||||||||||||||| |||||||||||    
T  8479322 gatgaagtgcagacagacttgcagatggacaaagc 8479356  T

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Target: chr4 (Bit Score: 136; Significance: 9e-71; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 221 - 435
Target Start/End: Original strand, 41067757 - 41067969
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgtaagcg 320  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41067757 gacatcggtatcaatcaaaagatgctgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgtaagtg 41067856  T
Q  321 gggacactgtcgtatcacatcatagcagacatcattaggtgttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaat 420  Q
    | |||| || ||| |||||||  || || ||||||||| |||||||||||||||||||||| | |||||||||||||||||| |||||||| |||| |||    
T  41067857 gtgacaatgccgtttcacatc--agtagccatcattagatgttatggcattggaacattcagctaatgtgcaatccagaccagcagagacagaagctaat 41067954  T
Q  421 tcaagaacagcagct 435  Q
    |||||  ||||||||    
T  41067955 tcaagtgcagcagct 41067969  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 41067694 - 41067729
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagcg 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  41067694 gatgaagtgcagacagacttgcagatggacaaagcg 41067729  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 8656773 - 8656683
Alignment:
Q  95 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| |||||||||||||||||||||   |  ||| ||   |||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  8656773 cgtgcctatgataaagaaaatgcagccagccaatttattccagttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 8656683  T

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Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 221 - 435
Target Start/End: Complemental strand, 19936809 - 19936597
Alignment:
Q  221 gacatcggtatcaatcaaaagaaactgccttcaacatctgttcatgttcttgaggaaattatagatgcagaagtcgcaactccacaggaaaatgtaagcg 320  Q
    ||||||||||||||||||||||  ||||| |||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||    
T  19936809 gacatcggtatcaatcaaaagatgctgccctcaacatctgttcatgttcttgaggaaactgtagacgcagaagtcgcaactccacaagaaaatgtaagcg 19936710  T
Q  321 gggacactgtcgtatcacatcatagcagacatcattaggtgttatggcattggaacattcaacaaatgtgcaatccagaccaacagagacataagcgaat 420  Q
    | |||| || ||||||||||  |||||| ||||||||| |||||||||||||||||| ||| |||||||||||||||||||| ||||| || ||||||||    
T  19936709 gtgacaatgccgtatcacat--tagcagccatcattagctgttatggcattggaacagtcagcaaatgtgcaatccagaccagcagaggcaaaagcgaat 19936612  T
Q  421 tcaagaacagcagct 435  Q
    |||||  ||||||||    
T  19936611 tcaagtgcagcagct 19936597  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 19936878 - 19936843
Alignment:
Q  185 gatgaagtgcagacagacttgcaaatggacaaagcg 220  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19936878 gatgaagtgcagacagacttgcagatggacaaagcg 19936843  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 185
Target Start/End: Complemental strand, 32235096 - 32235006
Alignment:
Q  95 cgtgcttatgataaagaaaatgcagccgctccttttgtttgggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||| |||||||||||||||||||||   |  ||| ||  ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  32235096 cgtgcctatgataaagaaaatgcagccagccaatttattctggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 32235006  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 185
Target Start/End: Original strand, 30418630 - 30418679
Alignment:
Q  136 ggttttatctaagaaacagcagcaacaagtcaagaggcaacttcagattg 185  Q
    ||||||||| ||||||||| |||||||||||||||  |||||||| ||||    
T  30418630 ggttttatcaaagaaacagaagcaacaagtcaagaaacaacttcaaattg 30418679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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