View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_3 (Length: 669)
Name: NF1246_low_3
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 11 - 629
Target Start/End: Complemental strand, 39300997 - 39300380
Alignment:
| Q |
11 |
caaaggcaaaacaaaattatgtatggattagtccacacaaaatnnnnnnnnntcattgacactctaaagattcaaacttgagatttgaatgaatgacagt |
110 |
Q |
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| T |
39300997 |
caaaggcaaaacaaaattatgtatggattagtccacacaaaataaaaaaaa-tcagggacactctaaagattcaaacttgagatttgaatgaatcacact |
39300899 |
T |
|
| Q |
111 |
ctaaatataattgttcaaaaataacccacaacaaaaggaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt |
210 |
Q |
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|||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300898 |
ctaaatataattgttcaaaaataagccacaacaaaacgaagatcgaattgaatattcttgaatcaccaataaactgttaaatcatttattgagaccaggt |
39300799 |
T |
|
| Q |
211 |
gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcactccttcaatcttccacgtgtctttaaacacgaaaaaccagcc |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300798 |
gtcttccattgatctgcagtgtacctctttctaccaagcacaaactcatacgaggcaatccttcaatcttccacgtgtctttaaacacgaaaaaccagcc |
39300699 |
T |
|
| Q |
311 |
tcgtctcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaacattcacacgtgtcattaat |
410 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
39300698 |
tcgtttcatccaatcatcctaatccatctatattttaattttcattattataagctgagtcacaatatccaatttcacaccattcacacgtgttattaat |
39300599 |
T |
|
| Q |
411 |
cactgtttcttattccacatgtcatactccatgcaaaacataccccccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39300598 |
cactgtttcttattccacatgtcatactccatgcaaaacatatccaccacaaacctcttcaaaccgccaatacctttctccttttaaatcacacaacatt |
39300499 |
T |
|
| Q |
511 |
tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactaccnnnnnnnnnnnnncaatcaaaagcaaaaccgtacgta |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39300498 |
tccatgcacacatacaaaaaacatcacaagtacttcaacaaagttcaagcatcttaaactacaaaaaaaaaaaaaacaatcaaaagcaaaaccgtacgta |
39300399 |
T |
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| Q |
611 |
acacccttttgttcttgtt |
629 |
Q |
| |
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||||||||||||||||||| |
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| T |
39300398 |
acacccttttgttcttgtt |
39300380 |
T |
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