View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_30 (Length: 443)
Name: NF1246_low_30
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 29 - 435
Target Start/End: Original strand, 18933829 - 18934235
Alignment:
| Q |
29 |
attttgctagttatcaatgaatagataaatacttatacgtacgtaacacatatttagacagattctccaaacacacaaaacccattatttacaaccgtga |
128 |
Q |
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| T |
18933829 |
attttgctagttatgaatgaatagataaatacttatacgtacgtaacacatatttagacagattctccaaacacacaaaacccattatttacaaccgtga |
18933928 |
T |
|
| Q |
129 |
atcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagc |
228 |
Q |
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| T |
18933929 |
atcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagc |
18934028 |
T |
|
| Q |
229 |
accctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaa |
328 |
Q |
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| T |
18934029 |
accctttaggttagaataaacatctaaaacatcatcatcatcatcgagcttaaaatatttcttaaccaacggagttgcaacaatataaggtgacacacaa |
18934128 |
T |
|
| Q |
329 |
ttcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccac |
428 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18934129 |
ttcacccgaataccaaaccgtccaagctcgatggccgtgtttctcatcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccac |
18934228 |
T |
|
| Q |
429 |
ctatgct |
435 |
Q |
| |
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||||||| |
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| T |
18934229 |
ctatgct |
18934235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 103 - 434
Target Start/End: Original strand, 18946091 - 18946419
Alignment:
| Q |
103 |
acaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatcacttcccaagtatagagcagcttca |
202 |
Q |
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| T |
18946091 |
acaaaatccattatttccgaccgtaagtccaccatctacaactagattgtgaccactaacatatttagactcatcacttcccaaatacaaagcagcttca |
18946190 |
T |
|
| Q |
203 |
gccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcgagcttaaagtatttcttaaccaacggag |
302 |
Q |
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| T |
18946191 |
gccacatcttttggcaaaagattagcaccctttaggttagaataaacatctagaactccatcatcatca---agcttaaagaaattcttagccaacggag |
18946287 |
T |
|
| Q |
303 |
ttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatcagcccaacaacggcgtgctttgcact |
402 |
Q |
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| T |
18946288 |
ttccgacaacataaggtgacacacaattcactcgaataccgtacggtccaagctcgatggccgtatttttcattagcccaacaacggcgtgctttgaact |
18946387 |
T |
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| Q |
403 |
tgtgtaggcatgtggagcgacaccacctatgc |
434 |
Q |
| |
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| T |
18946388 |
tgtgtaggcatgtgaagccacaccacctatgc |
18946419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 78 - 420
Target Start/End: Original strand, 18929207 - 18929546
Alignment:
| Q |
78 |
atatttagacagattctccaaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactcatc |
177 |
Q |
| |
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||||| ||||||||| | ||||||||||||| ||||| ||| | || ||| ||||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
18929207 |
atattcagacagattgttcaaacacacaaaatccattgtttgcgacactgactcctccatctatgacaagattaagaccactaacatacttagactcatc |
18929306 |
T |
|
| Q |
178 |
acttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcgagc |
277 |
Q |
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| T |
18929307 |
acttcccaaatacaaagcagcttcagccacatcttttggcacaagattagtaccctttaggttagaaaaaatatctagagctccaccatcatca---agc |
18929403 |
T |
|
| Q |
278 |
ttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctcatca |
377 |
Q |
| |
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|||||| | || |||||| |||||| |||| || |||||| ||||||||||||||||||||||| || | ||||||||||| |||||||| ||||||| |
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| T |
18929404 |
ttaaagaaatttgtaaccatcggagtcgcaagaaaataaggcgacacacaattcacccgaataccgaatggcccaagctcgatagccgtgtttctcatca |
18929503 |
T |
|
| Q |
378 |
gcccaacaacggcgtgctttgcacttgtgtaggcatgtggagc |
420 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
18929504 |
gcccaacaacggcgtgctttgaacttgtgtaggcatgtggagc |
18929546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 75 - 435
Target Start/End: Original strand, 18938562 - 18938919
Alignment:
| Q |
75 |
cacatatttagacagattctccaaacacacaaaacccattatttacaaccgtgaatcctccatcgatgacaagattgtgaccactaacatacttagactc |
174 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||| ||||| || || ||| | ||||||| | |||||||||||||||||||||||||||||| || |
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| T |
18938562 |
cacatatttagacagattgtccaaacacagaaaatccattgttagagacactgactgctccatctacgacaagattgtgaccactaacatacttagattc |
18938661 |
T |
|
| Q |
175 |
atcacttcccaagtatagagcagcttcagccacatcttttggcacaagattagcaccctttaggttagaataaacatctagaacatcatcatcatcatcg |
274 |
Q |
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||||| |||||||| |||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||| | ||||||||| |
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| T |
18938662 |
gtcactgcccaagtaaagagaagcttcagccacatctttaggcacaagattagtaccctttaggttagaataaagccctagaagcccttcatcatca--- |
18938758 |
T |
|
| Q |
275 |
agcttaaagtatttcttaaccaacggagttgcaacaatataaggtgacacacaattcacccgaataccaaaccgtccaagctcgatggccgtgttcctca |
374 |
Q |
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||||| ||| | |||||| ||| ||| || || |||||||||||||| ||||||||||||||||||| ||| ||||||| ||||| |||||||| |||| |
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| T |
18938759 |
agctttaagaagttcttagccatcggtgtggcgacaatataaggtgaaacacaattcacccgaatactgaacggtccaagttcgattgccgtgtttctca |
18938858 |
T |
|
| Q |
375 |
tcagcccaacaacggcgtgctttgcacttgtgtaggcatgtggagcgacaccacctatgct |
435 |
Q |
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||||||| | ||| || ||||||| ||||||||||||||||| ||| | |||||||||||| |
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| T |
18938859 |
tcagccccaaaacagcatgctttgaacttgtgtaggcatgtgaagccataccacctatgct |
18938919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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