View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1246_low_31 (Length: 436)

Name: NF1246_low_31
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1246_low_31
NF1246_low_31
[»] chr1 (7 HSPs)
chr1 (1-412)||(24310270-24310684)
chr1 (1-405)||(24322842-24323238)
chr1 (50-332)||(24415927-24416197)
chr1 (50-405)||(24340484-24340830)
chr1 (50-405)||(24352849-24353195)
chr1 (1-306)||(24367334-24367633)
chr1 (371-405)||(24415851-24415885)
[»] chr5 (6 HSPs)
chr5 (50-322)||(42561975-42562235)
chr5 (48-115)||(9120117-9120184)
chr5 (219-307)||(29696401-29696489)
chr5 (65-115)||(179412-179462)
chr5 (125-164)||(29712161-29712200)
chr5 (51-103)||(29696602-29696654)
[»] chr4 (26 HSPs)
chr4 (51-312)||(49040795-49041046)
chr4 (50-115)||(7878737-7878802)
chr4 (51-164)||(48863573-48863683)
chr4 (50-108)||(7790441-7790499)
chr4 (50-108)||(7908663-7908721)
chr4 (50-115)||(7773467-7773532)
chr4 (50-160)||(48852993-48853100)
chr4 (200-324)||(48863401-48863525)
chr4 (47-115)||(49043807-49043875)
chr4 (51-110)||(48156072-48156131)
chr4 (50-108)||(7813838-7813896)
chr4 (50-103)||(7771761-7771814)
chr4 (53-110)||(48147358-48147415)
chr4 (219-312)||(49043994-49044087)
chr4 (50-102)||(50666682-50666734)
chr4 (50-109)||(48864395-48864454)
chr4 (50-109)||(49038520-49038579)
chr4 (50-108)||(7800998-7801056)
chr4 (58-164)||(48903260-48903366)
chr4 (50-115)||(45371716-45371781)
chr4 (230-307)||(48705198-48705275)
chr4 (51-103)||(7237386-7237438)
chr4 (50-108)||(7786825-7786883)
chr4 (64-110)||(45384548-45384594)
chr4 (50-99)||(37826632-37826681)
chr4 (47-115)||(49048194-49048262)
[»] chr3 (5 HSPs)
chr3 (51-110)||(11015134-11015193)
chr3 (51-108)||(11024146-11024203)
chr3 (51-108)||(11005571-11005628)
chr3 (78-115)||(47451570-47451607)
chr3 (231-312)||(47451717-47451798)
[»] chr7 (1 HSPs)
chr7 (50-115)||(48884178-48884243)
[»] chr6 (3 HSPs)
chr6 (64-103)||(21979284-21979323)
chr6 (53-115)||(21016175-21016237)
chr6 (272-324)||(21015978-21016030)
[»] chr8 (1 HSPs)
chr8 (64-108)||(15349244-15349288)


Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 24310684 - 24310270
Alignment:
Q  1 tttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattctttcatcaccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  24310684 tttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaagactgcactttgtattctttcatcaccca 24310585  T
Q  101 tatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310584 tatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatca 24310485  T
Q  201 t---catctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaa 297  Q
    |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310484 tgatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaa 24310385  T
Q  298 tagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcgttgcacacatt 397  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24310384 tagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcactataaaaaggtaaatgtgcaggactcacaatttcgttgcacacatt 24310285  T
Q  398 agctctcattgaaaa 412  Q
    |||||||||||||||    
T  24310284 agctctcattgaaaa 24310270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 1 - 405
Target Start/End: Complemental strand, 24323238 - 24322842
Alignment:
Q  1 tttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattctttcatca---- 96  Q
    |||||||||||||||||||||||| |  |  ||||||| ||||||||| ||||||||||||| || |||| |||||||||||||||||||||||||        
T  24323238 tttttgtacaacatacaagggaaacgccatgaatggtaagcaaatcaagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T
Q  97 cccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatcatc 196  Q
    ||||||||||||||||| ||  ||||  || ||||||||||||| |||||||||||||||||||||||| | ||||| ||||| ||   |||||          
T  24323138 cccatatatcaactttacccaagtcctccaaaacccatagactgggaaatcctctaaatacccataaaccataatctttcgaaaca---tcaat------ 24323048  T
Q  197 atcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtga 296  Q
       ||||||| ||| |||||| |||| || | | ||||| |||| || ||||| |||| ||| ||||||   | ||||| |||  | |||||||||||||    
T  24323047 ---atcatctaggaaaggaatctctacaaattttctttccattagatcaaaggcaacagtaagatactcatgtgcatcaggacttaaagccaaccagtga 24322951  T
Q  297 atagccccattgaagacggactctaccacagaataagcaaaaggagaaagctcacta-taaaaaggtaaatgtgcaggactcacaatttcgttgcacaca 395  Q
    |||||||| |||||||| |||||||||||||||||||  || |||||||| | ||||  ||||||| ||||||| ||||| |||||||||||| ||| ||    
T  24322950 atagccccgttgaagaccgactctaccacagaataagtgaagggagaaag-ttactacaaaaaaggcaaatgtgtaggacccacaatttcgttccacgca 24322852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 50 - 332
Target Start/End: Complemental strand, 24416197 - 24415927
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 149  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||||||||    
T  24416197 aacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatccttaaacctcaaaacccatagactgagaaatcct 24416098  T
Q  150 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaagg 249  Q
    |||||||||||||||||| ||||||| || | | |||||||         ||||  |||||||||||| ||||||||| |||||||  ||||||||||||    
T  24416097 ctaaatacccataaactataatctgtagaccaaaattcaat---------atcacttgggagaggaatctctagaagtttcctttccgttaaatgaaagg 24416007  T
Q  250 aaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataa 332  Q
       ||| ||   | ||   ||  |||||||| | ||| ||||| |||||||||||||||||||| ||||||||||||| ||||    
T  24416006 ctgcaacaaagaaatc---tatctcatgacggaaagctaaccaatgaatagccccattgaagaccgactctaccacaggataa 24415927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 405
Target Start/End: Complemental strand, 24340830 - 24340484
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 149  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||    
T  24340830 aacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcct 24340731  T
Q  150 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaagg 249  Q
    ||| |||||||||||| |||| | ||  ||||||  ||||          |||||||||||||||||| |||| |||| ||||||| | ||| | |||||    
T  24340730 ctacatacccataaaccacaaaccgtataaccatggtcaa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaagg 24340640  T
Q  250 aaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctc 349  Q
     ||||| || ||| ||   |  ||||| |   | |||||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   ||     
T  24340639 caacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggactt 24340540  T
Q  350 actataaaaaggtaaatgtgcaggactcacaatttcgttgcacacattagctctca 405  Q
    |||| ||||||| ||||| | ||| |||||||||||||| ||| ||||||||||||    
T  24340539 actacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctca 24340484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 405
Target Start/End: Complemental strand, 24353195 - 24352849
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 149  Q
    ||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||  ||||||| |||  ||||||||||||||| |||||||||    
T  24353195 aacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatcctcatccaccataacccatagacttagaaatcct 24353096  T
Q  150 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaagg 249  Q
    ||| |||||||||||| |||| | ||  ||||||  ||||          |||||||||||||||||| |||| |||| ||||||| | ||| | |||||    
T  24353095 ctacatacccataaaccacaaaccgtataaccatggtcaa---------aatcatctgggagaggaatctctacaagtttcctttcgactaattcaaagg 24353005  T
Q  250 aaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctaccacagaataagcaaaaggagaaagctc 349  Q
     ||||| || ||| ||   |  ||||| |   | |||||||||||||||||| || |||||||| |||||||| |  | |||| |||| |||||   ||     
T  24353004 caacaacaagatattcatgtgtatcataattgaaagccaaccagtgaatagctccgttgaagaccgactctactaagggataaacaaagggagaggactt 24352905  T
Q  350 actataaaaaggtaaatgtgcaggactcacaatttcgttgcacacattagctctca 405  Q
    |||| ||||||| ||||| | ||| |||||||||||||| ||| ||||||||||||    
T  24352904 actacaaaaaggcaaatgggtagggctcacaatttcgttccacgcattagctctca 24352849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 24367633 - 24367334
Alignment:
Q  1 tttttgtacaacatacaagggaaatgtaagaaatggtatgcaaatcaaaaacaagagttttactccaagaggactgcactttgtattctttcatcaccca 100  Q
    ||||||||||||||| | || |||||  || |||||||| || |   | ||||||||||||| ||||||| || |||||||||||||||| ||| |||||    
T  24367633 tttttgtacaacatatagggaaaatgcgaggaatggtatccatagttagaacaagagttttagtccaagacgaatgcactttgtattcttccattaccca 24367534  T
Q  101 tatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatacccataaactacaatctgtcgaaccatattcaatatca-tcatc 199  Q
    ||||| || | |||| ||   ||||| ||||||||||||||||||||||||||||||||||||||     ||||   || |||   ||   ||| | ||     
T  24367533 tatataaagtgtatc-tct--cctcaaaacccatagactgagaaatcctctaaatacccataaaccctggtctgaaaaatcat---catagtcaattat- 24367441  T
Q  200 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 299  Q
    |||| ||||||||||||| || |||||| ||||||| |||||| |||||| |||||||||||   | | || ||||| ||||| || |||||||||||||    
T  24367440 atcaactgggagaggaatatcgagaagtttcctttccattaaaagaaaggcaacaataacattgacacgtatatcataacgaaaagtcaaccagtgaata 24367341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 405
Target Start/End: Complemental strand, 24415885 - 24415851
Alignment:
Q  371 aggactcacaatttcgttgcacacattagctctca 405  Q
    |||||||||||||||||| ||||||||||||||||    
T  24415885 aggactcacaatttcgttccacacattagctctca 24415851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 50 - 322
Target Start/End: Original strand, 42561975 - 42562235
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 149  Q
    ||||||| | ||| ||||||| || ||||||||||||||||||||||||||||||||||| |||   |||||||||| || |||||||||||||||||||    
T  42561975 aacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaacatta---tcgtccctcaaaatccatagactgagaaatcct 42562071  T
Q  150 ctaaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttcaattaaatgaaagg 249  Q
    ||||||||||| |||| |||| || | |||  ||| | |||||||  ||       ||| ||| |||| ||||||||| |||||||  ||||||||||||    
T  42562072 ctaaatacccaaaaaccacaacctttggaattataattaatatca--at-------tggaagaagaatctctagaagtttcctttccgttaaatgaaagg 42562162  T
Q  250 aaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaagacggactctac 322  Q
     |||||||||||  ||  ||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  42562163 caacaataacatggtcatatatatcatgacgaagagccaaccagtgaatagccccattgaagaacgactctac 42562235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 9120184 - 9120117
Alignment:
Q  48 aaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    ||||||||||||||  |||||||||| ||||||||||||||||||||||||||||| |||||| ||||    
T  9120184 aaaacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatc 9120117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 219 - 307
Target Start/End: Complemental strand, 29696489 - 29696401
Alignment:
Q  219 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 307  Q
    ||||||||| ||||||||||||||||||||| ||||||||||  |    ||| ||||| ||||| ||||||||||||||||||||||||    
T  29696489 tctagaagtttcctttcaattaaatgaaaggcaacaataacaggcattgatatatcattacgaaaagccaaccagtgaatagccccatt 29696401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 179462 - 179412
Alignment:
Q  65 ccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 179412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 29712161 - 29712200
Alignment:
Q  125 cataacccatagactgagaaatcctctaaatacccataaa 164  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  29712161 catatcccatagactgagacatcctctaaatacccataaa 29712200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 29696654 - 29696602
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatat 103  Q
    |||||||| ||| |||||||||| ||||| ||||||| || ||||||||||||    
T  29696654 acaagagtcttagtccaagaggattgcacattgtatttttccatcacccatat 29696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 51 - 312
Target Start/End: Original strand, 49040795 - 49041046
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctc 150  Q
    |||||| ||||| ||||||| || ||||||   ||||||| ||||||||||||||||||  |||  ||   || |  ||||||||||||||||||||||     
T  49040795 acaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtatgatc---ccccgaaacccatagactgagaaatcctt 49040891  T
Q  151 taaatacccataaactacaatctgtcgaaccatattcaatatcatcatcatcatctgggagaggaatttctagaagtatcctttca-attaaatgaaagg 249  Q
    ||||||||||||||  || |||  | ||| ||| ||||||||||||         ||||||||| ||   |||||||  ||||||  |||||||||||||    
T  49040892 taaatacccataaatcacgatcattagaatcattttcaatatcatc---------tgggagaggtatcaatagaagttccctttcctattaaatgaaagg 49040982  T
Q  250 a-aacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 312  Q
    | ||||||||||||  | |||| ||||||||||| ||||||||| ||||||||||| |||||||    
T  49040983 acaacaataacataaacacatatatcatgacgaaaagccaaccaatgaatagccccgttgaaga 49041046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 7878802 - 7878737
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7878802 aacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatc 7878737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 51 - 164
Target Start/End: Complemental strand, 48863683 - 48863573
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctc 150  Q
    |||||||||||| ||||||| || ||||||  |||||||| |||||||||||| ||||| ||||  ||   || |  |||||||||||||||| ||||||    
T  48863683 acaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaaccttatgatc---ccccgaaacccatagactgagagatcctc 48863587  T
Q  151 taaatacccataaa 164  Q
    ||||||||||||||    
T  48863586 taaatacccataaa 48863573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7790499 - 7790441
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||    
T  7790499 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 7790441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7908721 - 7908663
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||    
T  7908721 aacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 7773467 - 7773532
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  7773467 aacaagagatttaatccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 7773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 48853100 - 48852993
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcct 149  Q
    ||||||||| ||| ||||||| ||  ||||||||||||||||||| |||||||| |||||| ||   || |||| ||| ||||||| ||| |||||| ||    
T  48853100 aacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgta---tcatcccccatgacccatatacttagaaattct 48853004  T
Q  150 ctaaataccca 160  Q
    |||||||||||    
T  48853003 ctaaataccca 48852993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 48863525 - 48863401
Alignment:
Q  200 atcatctgggagaggaatttctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaata 299  Q
    ||||||| ||||||| ||   |||||||  ||||||  ||||| |||||| ||||||||||||  | | || ||||||||||| ||||||||| ||||||    
T  48863525 atcatctaggagaggtatcaatagaagttccctttccgttaaacgaaaggcaacaataacataaacacctatatcatgacgaaaagccaaccaatgaata 48863426  T
Q  300 gccccattgaagacggactctacca 324  Q
    ||||| ||||||| ||| |||||||    
T  48863425 gccccgttgaagaaggagtctacca 48863401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 49043807 - 49043875
Alignment:
Q  47 aaaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||||||||| ||| |||| || || ||||||||||||||||||||||||||||| |||||| ||||    
T  49043807 aaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatc 49043875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 48156072 - 48156131
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 110  Q
    |||||||||||| ||||||| || |||||||||||||| |||||||||||||| ||||||    
T  48156072 acaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaact 48156131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7813896 - 7813838
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||||||||| ||||||| || ||||||||||||||||||| ||||||||| ||||    
T  7813896 aacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 7771814 - 7771761
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatat 103  Q
    ||||||||||||| |||| || || |||||||||||||||||||||||||||||    
T  7771814 aacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatat 7771761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  53 aagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 110  Q
    |||||| ||| ||||||| || ||||||||||||||||||||||||||||| ||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 312
Target Start/End: Original strand, 49043994 - 49044087
Alignment:
Q  219 tctagaagtatcctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 312  Q
    |||| |||| ||||||||||||||| ||||| ||||||||||| |    ||| |||| || ||| |||||||||||||||||||||||| ||||    
T  49043994 tctaaaagtttcctttcaattaaatcaaaggcaacaataacattcattgataaatcaagatgaaaagccaaccagtgaatagccccattaaaga 49044087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 50666734 - 50666682
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccata 102  Q
    ||||||||||||| ||||||| || |||||||||||||||| |||||||||||    
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccata 50666682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 48864454 - 48864395
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaac 109  Q
    ||||||| | ||| ||||||| || ||||||||||||||||||||||||||||| |||||    
T  48864454 aacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 109
Target Start/End: Original strand, 49038520 - 49038579
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaac 109  Q
    ||||||||| ||| ||||||| || || |||||||||||||||||||||||||| |||||    
T  49038520 aacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7801056 - 7800998
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||||||||| ||||||| || ||||||||||| ||||||| ||||||||| ||||    
T  7801056 aacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 48903366 - 48903260
Alignment:
Q  58 ttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatcctcgtccctcataacccatagactgagaaatcctctaaatac 157  Q
    ||||| |||||||  | ||||||||||||||||||||||||||||| |||| |||||  ||||    || | ||||||| || |||||| ||| ||||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaaatttattatcgtaatccaaagcccataggctaagaaattctccaaatac 48903267  T
Q  158 ccataaa 164  Q
    |||||||    
T  48903266 ccataaa 48903260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 45371716 - 45371781
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    ||||| ||| ||| ||||||| || |||||||||||||||||||| |||||||| |||||| ||||    
T  45371716 aacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 230 - 307
Target Start/End: Original strand, 48705198 - 48705275
Alignment:
Q  230 cctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccatt 307  Q
    |||||| ||||||| ||||| ||||||||||| ||  | || ||||||||||  ||||||||| ||||||||||||||    
T  48705198 cctttccattaaatcaaaggcaacaataacatcctttcgtaaatcatgacgataagccaaccaatgaatagccccatt 48705275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 103
Target Start/End: Original strand, 7237386 - 7237438
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatat 103  Q
    |||||||||||| ||||| | || |||| ||||||||||||||||||||||||    
T  7237386 acaagagttttagtccaaaacgaatgcattttgtattctttcatcacccatat 7237438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 7786883 - 7786825
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||||| ||| |||||||  | ||||| ||||||||||||||||||||||| ||||    
T  7786883 aacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaa 7786825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 110
Target Start/End: Original strand, 45384548 - 45384594
Alignment:
Q  64 tccaagaggactgcactttgtattctttcatcacccatatatcaact 110  Q
    ||||||| || |||||||| |||||||||||||||||||| ||||||    
T  45384548 tccaagacgaatgcactttatattctttcatcacccatatttcaact 45384594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 37826632 - 37826681
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcaccc 99  Q
    ||||||||| ||| ||||||| || |||| ||||||||||||||||||||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcaccc 37826681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 115
Target Start/End: Original strand, 49048194 - 49048262
Alignment:
Q  47 aaaaacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||||| ||| ||| |||| || || |||||||| || ||||||||||||||||| |||||| ||||    
T  49048194 aaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatc 49048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 11015134 - 11015193
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaact 110  Q
    ||||||||||||  |||||| || |||||||||||||||||||| |||||||| ||||||    
T  11015134 acaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaact 11015193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    |||||||| ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 11005571 - 11005628
Alignment:
Q  51 acaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    |||||||  ||| ||||||| || |||||||||||||||||||| |||||||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 115
Target Start/End: Original strand, 47451570 - 47451607
Alignment:
Q  78 actttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||||||||||||||||||||||| |||||| ||||    
T  47451570 actttgtattctttcatcacccatatttcaactatatc 47451607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 312
Target Start/End: Original strand, 47451717 - 47451798
Alignment:
Q  231 ctttcaattaaatgaaaggaaacaataacatactcgcatacatcatgacgaatagccaaccagtgaatagccccattgaaga 312  Q
    ||||| ||||||| ||| | | ||||||||| |  | ||| ||||||||||| ||||||||| | |||||||||||||||||    
T  47451717 ctttccattaaatcaaatgcagcaataacattcatggatatatcatgacgaaaagccaaccaataaatagccccattgaaga 47451798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 48884243 - 48884178
Alignment:
Q  50 aacaagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    ||||||||| ||| |||||||    |||||||||||||||||||||||| |||| |||||||||||    
T  48884243 aacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatc 48884178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 21979284 - 21979323
Alignment:
Q  64 tccaagaggactgcactttgtattctttcatcacccatat 103  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  21979284 tccaagaggaacgcactttgtattctttcatcacccatat 21979323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 21016237 - 21016175
Alignment:
Q  53 aagagttttactccaagaggactgcactttgtattctttcatcacccatatatcaactttatc 115  Q
    |||||| ||| ||||||| || || ||||||||||||||||| |||||||| |||||| ||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatc 21016175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Complemental strand, 21016030 - 21015978
Alignment:
Q  272 atcatgacgaatagccaaccagtgaatagccccattgaagacggactctacca 324  Q
    ||||||||||| ||||||||| |||||||||||||| || || ||| ||||||    
T  21016030 atcatgacgaaaagccaaccaatgaatagccccattaaaaaccgaccctacca 21015978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 15349288 - 15349244
Alignment:
Q  64 tccaagaggactgcactttgtattctttcatcacccatatatcaa 108  Q
    ||||||| || | ||||||||||||||||||||||||||| ||||    
T  15349288 tccaagaagagttcactttgtattctttcatcacccatatttcaa 15349244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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