View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1246_low_34 (Length: 428)
Name: NF1246_low_34
Description: NF1246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1246_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 6e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 199 - 398
Target Start/End: Original strand, 979302 - 979500
Alignment:
| Q |
199 |
gtaccaactatccagaatctttctttcaactagattaaggaaggataacaaagtaagataagaggaaagagaggtgtggagagagttcaaggaggcatca |
298 |
Q |
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| T |
979302 |
gtaccaactatccagaatctgtctttcaactagattaaggaaggataacaaagtaagagaagaggaaagag--gtgtggagagagttcaaggaggcatca |
979399 |
T |
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| Q |
299 |
attctgtcaactaaatttgaaaccgtacttttttcttaaattaagtgtaacatctatact-aatttatctagaatacttagcatgtgcgttaaacttagt |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| || |||||||||| |
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| T |
979400 |
attctgtcaactaaatttgaaaccgtacttttttcttaaattaagtgtaacatctatactaaatttatctagaatatttagcatgcgcaataaacttagt |
979499 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 979114 - 979233
Alignment:
| Q |
12 |
aaaggcaaaaaggaaagccaaagaataaactcaaaggaacataattcggttggaaattgagatgtaaacagggga-aaaactctgagtattagaacccaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
979114 |
aaaggcaaaaaggaaagccaaagaataaactcaaaggaacctgattcgattggaaattgagatgtaaacaggggataaaactctgagtattagaacccag |
979213 |
T |
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| Q |
111 |
gtattaatataaagtgattg |
130 |
Q |
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| T |
979214 |
gtattaatataaagtgattg |
979233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 359 - 400
Target Start/End: Complemental strand, 6454970 - 6454929
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagtact |
400 |
Q |
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| T |
6454970 |
aatttatctagaatatttagcatacgcgttaaacttagtact |
6454929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 359 - 400
Target Start/End: Original strand, 8677869 - 8677910
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagtact |
400 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| |
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| T |
8677869 |
aatttatctagaatatttagcatgtgcgttaaacttagtact |
8677910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 31131013 - 31130974
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagta |
398 |
Q |
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||||||||||||||| |||||||||||||||||| ||||| |
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| T |
31131013 |
aatttatctagaatatttagcatgtgcgttaaacctagta |
31130974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 398
Target Start/End: Complemental strand, 26075961 - 26075922
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagta |
398 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
26075961 |
aatttatctagaatatttatcatgtgcgttaaacttagta |
26075922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 19079046 - 19079005
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagtactg |
401 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
19079046 |
aatttatctagaatatttagcatgtgcgtt-aacttagtactg |
19079005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 401
Target Start/End: Complemental strand, 19079290 - 19079249
Alignment:
| Q |
359 |
aatttatctagaatacttagcatgtgcgttaaacttagtactg |
401 |
Q |
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||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
19079290 |
aatttatctagaatatttagcatgtgcgtt-aacttagtactg |
19079249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 400
Target Start/End: Complemental strand, 9984828 - 9984790
Alignment:
| Q |
362 |
ttatctagaatacttagcatgtgcgttaaacttagtact |
400 |
Q |
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||||||| |||| |||||||||||||||||||||||||| |
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| T |
9984828 |
ttatctataatagttagcatgtgcgttaaacttagtact |
9984790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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